SMTL ID : 5l7n.1

Plexin A1 extracellular fragment, domains 7-10 (IPT3-IPT6)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.239, T.241, T.242 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.241 Hydrogen bonds: A:T.241, A:T.242 NAG.2: 2 residues within 4Å: Chain A: N.328, T.330 No protein-ligand interaction detected (PLIP) NAG.3: 4 residues within 4Å: Chain A: R.111, S.164, N.184, T.186 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.111 Water bridges: A:N.213

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: L.192, R.193, I.194, E.197, S.283 No protein-ligand interaction detected (PLIP)

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 4 residues within 4Å: Chain A: S.256, P.257, P.258, E.259 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kong, Y. et al., Structural Basis for Plexin Activation and Regulation. Neuron (2016)

Release Date

2017-03-15

Peptides

Plexin-A1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Plexin-A1