SMTL ID : 5l95.1

Crystal structure of human UBA5 in complex with UFM1 and AMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-2-2-mer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 19 residues within 4Å: Chain A: G.13, G.15, G.16, V.17, D.37, Y.38, D.39, K.60, Y.82, N.83, I.84, T.85, C.114, V.115, D.116, N.117, A.120 Chain C: V.79, G.80 16 PLIP interactions: 13 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:G.16, A:V.17, A:Y.38, A:Y.38, A:D.39, A:K.60, A:N.83, A:I.84, A:D.116, A:D.116, A:N.117, C:G.80, C:G.80, C:G.80 Water bridges: A:G.15, A:G.15

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.159, C.162, C.236, C.241 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.159, A:C.162, A:C.236, A:C.241 ZN.3: 4 residues within 4Å: Chain B: C.159, C.162, C.236, C.241 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.159, B:C.162, B:C.236, B:C.241

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oweis, W. et al., Trans-Binding Mechanism of Ubiquitin-like Protein Activation Revealed by a UBA5-UFM1 Complex. Cell Rep (2016)

Release Date

2016-09-21

Peptides

Ubiquitin-like modifier-activating enzyme 5: AB
Ubiquitin-fold modifier 1: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Ubiquitin-like modifier-activating enzyme 5

Ubiquitin-fold modifier 1