SMTL ID : 5l9v.1 (1 other biounit)

HIF prolyl hydroxylase 2 (PHD2-R281C/P317C) cross-linked to HIF-1alpha NODD-L397C/D412C and N-oxalylglycine (NOG) (complex-1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: H.139, D.141, F.192, H.200 Chain B: P.8 Ligands: OGA.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.139, A:D.141, A:H.200, H2O.1

1 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.2: 16 residues within 4Å: Chain A: R.78, M.125, Y.129, Y.136, H.139, D.141, I.153, Y.155, L.169, H.200, V.202, R.209, A.211, W.215 Chain B: P.8 Ligands: MN.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.155 Water bridges: A:R.78, A:Y.129, A:R.209, A:R.209 Salt bridges: A:R.78, A:H.139, A:R.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chowdhury, R. et al., Structural basis for oxygen degradation domain selectivity of the HIF prolyl hydroxylases. Nat Commun (2016)

Release Date

2016-08-31

Peptides

Egl nine homolog 1: A
Hypoxia-inducible factor 1-alpha: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Egl nine homolog 1

Hypoxia-inducible factor 1-alpha

Related Entries With Identical Sequence