SMTL ID : 5laz.1

Novel Spiro[3H-indole-3,2 -pyrrolidin]-2(1H)-one Inhibitors of the MDM2-p53 Interaction: HDM2 (MDM2) IN COMPLEX WITH COMPOUND BI-0252

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

monomer

Ligands

1 x 6ST: 4-[(2~{R},3~{a}~{S},5~{S},6~{S},6~{a}~{S})-6'-chloranyl-6-(3-chloranyl-2-fluoranyl-phenyl)-4-(cyclopropylmethyl)-2'-oxidanylidene-spiro[1,2,3,3~{a},6,6~{a}-hexahydropyrrolo[3,2-b]pyrrole-5,3'-1~{H}-indole]-2-yl]benzoic acid(Non-covalent)

6ST.1: 14 residues within 4Å: Chain A: L.37, L.40, G.41, I.44, M.45, Y.50, H.56, F.69, F.74, V.76, K.77, H.79, I.82, Y.83 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.37, A:L.40, A:I.44, A:I.44, A:Y.50, A:Y.50, A:F.74, A:V.76, A:V.76, A:K.77, A:I.82, A:I.82 Hydrogen bonds: A:L.37, A:G.41 Water bridges: A:K.77 Salt bridges: A:H.56, A:K.77 pi-Stacking: A:H.79 Halogen bonds: A:H.79

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 1 residues within 4Å: Chain A: H.56 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.56, H2O.1

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: P.3, A.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.4 Water bridges: A:S.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gollner, A. et al., Discovery of Novel Spiro[3H-indole-3,2'-pyrrolidin]-2(1H)-one Compounds as Chemically Stable and Orally Active Inhibitors of the MDM2-p53 Interaction. J. Med. Chem. (2016)

Release Date

2016-11-02

Peptides

E3 ubiquitin-protein ligase Mdm2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase Mdm2

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