SMTL ID : 5lb9.1

Structure of the T175V Etr1p mutant in the monoclinic form P21

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: K.203, A.352, K.353 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.203 GOL.13: 9 residues within 4Å: Chain A: Y.310, I.311, N.314 Chain B: Y.182, G.319, F.320, W.321, E.324, L.325 7 PLIP interactions: 3 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:Y.310, B:W.321, B:W.321 Water bridges: A:N.314, A:N.314, B:E.324, B:E.324 GOL.14: 7 residues within 4Å: Chain A: V.126, S.169, T.323, L.326, K.333 Ligands: SO4.7, SO4.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.169 GOL.15: 9 residues within 4Å: Chain A: Y.182, G.319, F.320, W.321, E.324, L.325 Chain B: Y.310, I.311, N.314 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:Y.310, B:N.314, A:Y.182, A:Y.182, A:W.321 Water bridges: A:G.319 GOL.16: 4 residues within 4Å: Chain B: T.31, T.90, T.91, E.92 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.91, B:E.92, B:E.92 GOL.23: 2 residues within 4Å: Chain B: H.181, L.325 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.181 Water bridges: B:N.329

13 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.250, R.284, S.308 Ligands: NA.12 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.250, A:S.308, A:S.308 Salt bridges: A:R.284 SO4.3: 4 residues within 4Å: Chain A: R.250, K.277, T.280, R.284 5 PLIP interactions: 5 interactions with chain A Water bridges: A:T.280, A:R.284 Salt bridges: A:R.250, A:K.277, A:R.284 SO4.4: 1 residues within 4Å: Chain A: Q.150 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.150 Water bridges: A:E.116, A:N.154 SO4.6: 7 residues within 4Å: Chain A: G.196, G.197, T.198, I.220, R.221, R.223 Ligands: NAP.5 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.196, A:G.196, A:T.198, A:S.199, A:R.221 Salt bridges: A:R.221, A:R.223 SO4.7: 8 residues within 4Å: Chain A: N.99, P.123, S.124, H.125, V.126, S.169, K.333 Ligands: GOL.14 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.169, A:S.169 Salt bridges: A:K.333 SO4.8: 4 residues within 4Å: Chain A: H.125, V.126, K.330 Ligands: GOL.14 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.126 Salt bridges: A:H.125, A:K.330 SO4.9: 6 residues within 4Å: Chain A: N.247, S.249, R.250, G.253, R.284, K.285 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.285, A:K.285 Salt bridges: A:R.250, A:K.285 SO4.10: 3 residues within 4Å: Chain A: N.287, N.288, K.313 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.287, A:N.288 Salt bridges: A:K.257, A:K.313 SO4.11: 3 residues within 4Å: Chain A: Q.32, H.33, K.84 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.33 Salt bridges: A:H.33, A:K.84 SO4.17: 8 residues within 4Å: Chain B: G.196, G.197, T.198, S.199, V.219, I.220, R.221, R.223 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:G.196, B:G.197, B:T.198, B:T.198, B:S.199, B:R.221 Water bridges: B:T.198, B:R.221, B:R.221, B:R.223 Salt bridges: B:R.221, B:R.223 SO4.18: 3 residues within 4Å: Chain B: Q.32, H.33, K.84 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.33 Salt bridges: B:H.33, B:K.84 SO4.19: 3 residues within 4Å: Chain B: R.284, S.308 Ligands: NA.22 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.308, B:S.308 Salt bridges: B:R.284 SO4.20: 5 residues within 4Å: Chain B: P.68, N.171, A.200, K.380 Ligands: NA.21 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:N.171 Water bridges: B:N.171, B:A.200, B:A.200, B:K.380, B:K.380 Salt bridges: B:K.380

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.5: 19 residues within 4Å: Chain A: V.170, N.171, V.174, G.196, T.198, S.199, A.200, V.201, R.221, R.223, V.274, Y.295, G.296, M.298, F.320, W.321, V.322, K.380 Ligands: SO4.6 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:V.170, A:V.174 Hydrogen bonds: A:N.171, A:G.196, A:T.198, A:T.198, A:A.200, A:V.201, A:R.221, A:R.221, A:G.297, A:F.320, A:V.322 Water bridges: A:S.69, A:S.199, A:K.380, A:K.380 Salt bridges: A:R.221, A:R.223, A:K.380, A:K.380 pi-Cation interactions: A:R.221, A:R.221

3 x NA: SODIUM ION(Non-functional Binders)

NA.12: 4 residues within 4Å: Chain A: P.306, T.307, S.308 Ligands: SO4.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.308, A:S.308 Water bridges: A:T.307 NA.21: 3 residues within 4Å: Chain B: S.199, A.200 Ligands: SO4.20 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.200 Water bridges: B:S.199, B:V.201 NA.22: 4 residues within 4Å: Chain B: P.306, T.307, S.308 Ligands: SO4.19 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.308, B:S.308 Water bridges: B:T.307

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rosenthal, R.G. et al., A conserved threonine prevents self-intoxication of enoyl-thioester reductases. Nat. Chem. Biol. (2017)

Release Date

2017-05-10

Peptides

Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1, mitochondrial

Related Entries With Identical Sequence