- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.2: 26 residues within 4Å:- Chain A: H.12, K.16, S.17, F.18, N.19, S.21, P.103, L.104, Y.105, W.106, F.107, T.148, T.149, G.150, G.151, Y.156, P.193, E.194, E.198, R.201, V.205
- Chain B: N.67, Y.68, G.69, D.118
- Ligands: 6T0.4
24 PLIP interactions:23 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:Y.105, A:Y.105, A:Y.105, B:Y.68
- Hydrogen bonds: A:F.18, A:N.19, A:N.19, A:S.21, A:S.21, A:L.104, A:L.104, A:W.106, A:F.107, A:T.148, A:T.148, A:G.150, A:G.151, A:Y.156, A:Y.156, A:E.194, A:R.201
- Salt bridges: A:H.12
- pi-Stacking: A:F.18, A:F.18
FAD.7: 26 residues within 4Å:- Chain A: N.67, Y.68, G.69, D.118
- Chain B: H.12, K.16, S.17, F.18, N.19, S.21, P.103, L.104, Y.105, W.106, F.107, T.148, T.149, G.150, G.151, Y.156, P.193, E.194, R.201, K.202, V.205
- Ligands: 6T0.3
24 PLIP interactions:22 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:Y.105, B:Y.105, B:Y.105, A:Y.68
- Hydrogen bonds: B:F.18, B:N.19, B:N.19, B:S.21, B:S.21, B:L.104, B:L.104, B:W.106, B:F.107, B:T.148, B:T.148, B:G.150, B:G.151, B:Y.156, A:N.67
- Salt bridges: B:H.12
- pi-Stacking: B:F.18, B:F.18, B:Y.105, B:W.106
- 4 x 6T0: 1-(2-methylpropyl)imidazo[4,5-c]quinolin-4-amine(Non-covalent)
6T0.3: 11 residues within 4Å:- Chain A: F.127, I.129, G.175, F.179
- Chain B: W.106, F.107, G.150, G.151, M.155, N.162
- Ligands: FAD.7
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:F.127, A:I.129
- Hydrogen bonds: A:G.175, B:N.162
6T0.4: 9 residues within 4Å:- Chain A: W.106, G.150, G.151, M.155, E.194
- Chain B: F.127, I.129, F.179
- Ligands: FAD.2
No protein-ligand interaction detected (PLIP)6T0.9: 2 residues within 4Å:- Chain B: D.28
- Ligands: 6T0.10
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:D.28
6T0.10: 5 residues within 4Å:- Chain B: K.23, N.24, V.27, D.28
- Ligands: 6T0.9
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:V.27
- Hydrogen bonds: B:D.28
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 2 residues within 4Å:- Chain A: S.197, E.199
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.197, A:S.197, A:E.199
SO4.6: 5 residues within 4Å:- Chain A: N.46, E.48, R.50
- Chain B: E.48, R.50
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:N.46, B:E.48
- Salt bridges: A:R.50, B:R.50
SO4.11: 3 residues within 4Å:- Chain B: T.57, A.82, S.83
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.83
- Water bridges: B:D.84
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gross, C. et al., Imiquimod Inhibits Mitochondrial Complex I and Induces K+ efflux-independent Nlrp3 Inflammasome Activation via Nek7. To Be Published
- Release Date
- 2016-07-27
- Peptides
- Ribosyldihydronicotinamide dehydrogenase [quinone]: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x 6T0: 1-(2-methylpropyl)imidazo[4,5-c]quinolin-4-amine(Non-covalent)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gross, C. et al., Imiquimod Inhibits Mitochondrial Complex I and Induces K+ efflux-independent Nlrp3 Inflammasome Activation via Nek7. To Be Published
- Release Date
- 2016-07-27
- Peptides
- Ribosyldihydronicotinamide dehydrogenase [quinone]: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B