SMTL ID : 5lc0.1

Crystal structure of Zika virus NS2B-NS3 protease in complex with a boronate inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x 6T8: N-((S)-3-(4-(aminomethyl)phenyl)-1-(((R)-4-guanidino-1-(5-hydroxy-1,3,2-dioxaborinan-2-yl)butyl)amino)-1-oxopropan-2-yl)benzamide(Covalent)

6T8.1: 22 residues within 4Å: Chain A: S.37, G.38, D.39, V.96, H.111, V.112, D.135, D.189, Y.190, P.191, A.192, G.193, S.195, G.211, N.212, G.213, V.214, V.215, Y.221 Chain B: V.96, H.111, K.114 14 PLIP interactions: 12 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:H.111, A:V.215, A:Y.221, B:K.114 Hydrogen bonds: A:S.37, A:Y.190, A:G.193, A:S.195, A:G.211, A:G.213, A:Y.221 Salt bridges: A:D.189 pi-Stacking: A:H.111 pi-Cation interactions: B:K.114 6T8.2: 23 residues within 4Å: Chain A: V.96, H.111, T.113, K.114 Chain B: S.37, G.38, D.39, V.96, H.111, V.112, D.135, D.189, Y.190, P.191, A.192, G.193, S.195, G.211, N.212, G.213, V.214, V.215, Y.221 19 PLIP interactions: 15 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:H.111, B:V.215, B:Y.221, B:Y.221, A:K.114, A:K.114 Hydrogen bonds: B:S.37, B:H.111, B:Y.190, B:G.193, B:S.195, B:G.211, B:G.213, B:Y.221 Salt bridges: B:D.189 pi-Cation interactions: B:H.111, B:Y.221, A:K.114, A:K.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lei, J. et al., Crystal structure of Zika virus NS2B-NS3 protease in complex with a boronate inhibitor. Science (2016)

Release Date

2016-07-06

Peptides

NS2B-NS3 protease,NS2B-NS3 protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NS2B-NS3 protease,NS2B-NS3 protease