SMTL ID : 5ldf.1

Maltose binding protein genetically fused to dodecameric glutamine synthetase

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-12-12-mer

Ligands

12 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 14 residues within 4Å: Chain M: N.12, D.14, K.15, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, W.340 5 PLIP interactions: 5 interactions with chain M Hydrogen bonds: M:W.62, M:R.66, M:R.66, M:E.153, M:Y.155 GLC-GLC.2: 14 residues within 4Å: Chain N: N.12, D.14, K.15, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, W.340 5 PLIP interactions: 5 interactions with chain N Hydrogen bonds: N:W.62, N:R.66, N:R.66, N:E.153, N:Y.155 GLC-GLC.3: 14 residues within 4Å: Chain O: N.12, D.14, K.15, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, W.340 5 PLIP interactions: 5 interactions with chain O Hydrogen bonds: O:W.62, O:R.66, O:R.66, O:E.153, O:Y.155 GLC-GLC.4: 14 residues within 4Å: Chain P: N.12, D.14, K.15, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, W.340 5 PLIP interactions: 5 interactions with chain P Hydrogen bonds: P:W.62, P:R.66, P:R.66, P:E.153, P:Y.155 GLC-GLC.5: 14 residues within 4Å: Chain Q: N.12, D.14, K.15, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, W.340 5 PLIP interactions: 5 interactions with chain Q Hydrogen bonds: Q:W.62, Q:R.66, Q:R.66, Q:E.153, Q:Y.155 GLC-GLC.6: 14 residues within 4Å: Chain R: N.12, D.14, K.15, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, W.340 5 PLIP interactions: 5 interactions with chain R Hydrogen bonds: R:W.62, R:R.66, R:R.66, R:E.153, R:Y.155 GLC-GLC.7: 14 residues within 4Å: Chain S: N.12, D.14, K.15, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, W.340 4 PLIP interactions: 4 interactions with chain S Hydrogen bonds: S:W.62, S:R.66, S:R.66, S:Y.155 GLC-GLC.8: 14 residues within 4Å: Chain T: N.12, D.14, K.15, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, W.340 4 PLIP interactions: 4 interactions with chain T Hydrogen bonds: T:W.62, T:R.66, T:R.66, T:Y.155 GLC-GLC.9: 14 residues within 4Å: Chain U: N.12, D.14, K.15, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, W.340 4 PLIP interactions: 4 interactions with chain U Hydrogen bonds: U:W.62, U:R.66, U:R.66, U:Y.155 GLC-GLC.10: 14 residues within 4Å: Chain V: N.12, D.14, K.15, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, W.340 4 PLIP interactions: 4 interactions with chain V Hydrogen bonds: V:W.62, V:R.66, V:R.66, V:Y.155 GLC-GLC.11: 14 residues within 4Å: Chain W: N.12, D.14, K.15, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, W.340 4 PLIP interactions: 4 interactions with chain W Hydrogen bonds: W:W.62, W:R.66, W:R.66, W:Y.155 GLC-GLC.12: 14 residues within 4Å: Chain X: N.12, D.14, K.15, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, W.340 4 PLIP interactions: 4 interactions with chain X Hydrogen bonds: X:W.62, X:R.66, X:R.66, X:Y.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coscia, F. et al., Fusion to a homo-oligomeric scaffold allows cryo-EM analysis of a small protein. Sci Rep (2016)

Release Date

2016-08-10

Peptides

Glutamine synthetase: ABCDEFGHIJKL
Maltose-binding periplasmic protein: MNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Glutamine synthetase

Maltose-binding periplasmic protein

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