SMTL ID : 5le8.2 (1 other biounit)

Crystal structure of DARPin-DARPin rigid fusion, variant DD_D12_15_D12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 6 residues within 4Å: Chain A: W.217, Y.250, T.251, G.252, W.284, H.286 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.250, A:H.286 TRS.2: 6 residues within 4Å: Chain A: W.56, Y.89, T.90, G.91, W.123, H.125 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.89, A:H.125

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: D.27, G.58, H.59, L.60, G.61 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.27, A:L.60, A:G.61 SO4.4: 4 residues within 4Å: Chain A: G.91, H.92, L.93, E.94 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.93, A:E.94 Water bridges: A:H.92 SO4.5: 4 residues within 4Å: Chain A: G.252, H.253, L.254, E.255 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.254, A:E.255 Water bridges: A:I.256 SO4.6: 4 residues within 4Å: Chain A: G.285, H.286, L.287, E.288 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.287, A:E.288 Water bridges: A:I.289 SO4.7: 5 residues within 4Å: Chain A: G.318, N.319, E.320, D.321, I.322 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.320, A:D.321 Water bridges: A:N.319, A:I.322 SO4.8: 4 residues within 4Å: Chain A: G.219, H.220, L.221, G.222 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.221, A:G.222 SO4.9: 4 residues within 4Å: Chain A: G.186, H.187, R.188, D.189 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.188, A:D.189 Water bridges: A:H.187, A:E.190

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 2 residues within 4Å: Chain A: K.308, D.316 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.308 Water bridges: A:D.316

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, Y. et al., Rigidly connected multispecific artificial binders with adjustable geometries. Sci Rep (2017)

Release Date

2017-08-02

Peptides

DD_D12_15_D12: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DD_D12_15_D12

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