SMTL ID : 5leo.1 (1 other biounit)

Complex structure of lysostaphin SH3b domain with peptidoglycan fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x GLY- GLY- GLY- GLY- GLY: GLY-GLY-GLY-GLY-GLY(Non-covalent)

GLY-GLY-GLY-GLY-GLY.1: 12 residues within 4Å: Chain A: N.6, Y.8, T.10, Y.12, T.30, G.31, P.32, F.33, M.36, E.52, M.54, Y.73 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.6, A:Y.8, A:Y.8, A:Y.8, A:Y.12, A:T.30, A:E.52, A:Y.73 Water bridges: A:E.52, A:E.52

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: P.37, Q.38 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.38 Water bridges: A:R.28, A:R.28, A:M.36 SO4.3: 5 residues within 4Å: Chain A: G.66, N.67, S.68, Q.70, I.72 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.67, A:N.67, A:S.68, A:Q.70

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 6 residues within 4Å: Chain A: E.15, V.53, V.60, V.76, R.77, I.93 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.53, A:V.60, A:V.76, A:I.93 Hydrogen bonds: A:R.77 Water bridges: A:W.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jagielska, E. et al., Complex structure of lysostaphin SH3doamin with peptidoglycan fragment. To Be Published

Release Date

2017-07-12

Peptides

Lysostaphin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysostaphin

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