SMTL ID : 5lg1.1

Room temperature structure of human IgG4-Fc from crystals analysed in situ

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- MAN- NAG- MAN- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.1: 11 residues within 4Å: Chain A: F.8, F.10, K.13, T.27, V.31, D.32, Q.62, N.64, T.66, R.68 Ligands: NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.68, A:K.13, A:K.13 Water bridges: A:T.27 NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.2: 12 residues within 4Å: Chain B: F.8, F.10, K.13, T.27, V.31, D.32, F.63, N.64, T.66, R.68, K.101 Ligands: NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.1 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:F.63 Hydrogen bonds: B:R.68, B:T.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davies, A.M. et al., Room temperature structure of human IgG4-Fc from crystals analysed in situ. Mol. Immunol. (2016)

Release Date

2016-12-14

Peptides

Ig gamma-4 chain C region: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ig gamma-4 chain C region

Related Entries With Identical Sequence