SMTL ID : 5lgn.1

Thieno[3,2-b]pyrrole-5-carboxamides as Novel Reversible Inhibitors of Histone Lysine Demethylase KDM1A/LSD1: Compound 19

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 36 residues within 4Å: Chain A: I.114, G.115, G.117, V.118, S.119, L.137, E.138, A.139, R.140, G.144, G.145, R.146, V.147, L.159, G.160, A.161, M.162, V.163, T.422, A.423, V.424, T.458, L.459, P.460, V.471, L.493, W.585, W.590, S.594, Y.595, G.634, E.635, T.644, V.645, A.648 Ligands: 6W0.2 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.493, A:Y.595 Hydrogen bonds: A:V.118, A:S.119, A:S.119, A:S.119, A:A.139, A:R.140, A:R.140, A:G.144, A:R.146, A:R.146, A:M.162, A:V.163, A:V.163, A:V.424, A:V.424, A:E.635, A:V.645 Salt bridges: A:R.146, A:R.146

1 x 6W0: ~{N}-[3-(methoxymethyl)phenyl]-4-methyl-thieno[3,2-b]pyrrole-5-carboxamide(Non-covalent)

6W0.2: 11 residues within 4Å: Chain A: V.163, T.165, Q.188, F.372, H.398, L.493, W.529, Y.595, A.643, T.644 Ligands: FAD.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.163, A:W.529, A:Y.595

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sartori, L. et al., Thieno[3,2-b]pyrrole-5-carboxamides as New Reversible Inhibitors of Histone Lysine Demethylase KDM1A/LSD1. Part 1: High-Throughput Screening and Preliminary Exploration. J. Med. Chem. (2017)

Release Date

2017-02-22

Peptides

Lysine-specific histone demethylase 1A: A
REST corepressor 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lysine-specific histone demethylase 1A

REST corepressor 1

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