SMTL ID : 5lhm.1

Crystal Structure of SafC from Myxococcus xanthus apo-Form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.31 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: E.65, V.66, G.67, V.68, F.140, D.142 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.65, H2O.3 MG.2: 8 residues within 4Å: Chain A: Q.47, D.168, N.169, I.210, A.211, D.212, G.213, L.214 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.168, A:A.211, A:G.213

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: R.218, R.220, K.221 Ligand excluded by PLIP

5 x BU3: (R,R)-2,3-BUTANEDIOL(Non-covalent)(Non-functional Binders)

BU3.4: 4 residues within 4Å: Chain A: R.191, R.192 Ligands: BU3.6, BU3.7 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.192 Water bridges: A:R.191 BU3.5: 4 residues within 4Å: Chain A: Q.13, R.16, D.17, D.22 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.13, A:D.17, A:D.17 Water bridges: A:R.27 BU3.6: 1 residues within 4Å: Ligands: BU3.4 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.183 BU3.7: 4 residues within 4Å: Chain A: R.192, A.195, K.196 Ligands: BU3.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.195 Hydrogen bonds: A:K.196 Water bridges: A:R.192 BU3.8: 4 residues within 4Å: Chain A: T.199, D.200, E.201, R.202 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.201, A:R.202 Water bridges: A:K.196, A:T.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Siegrist, J. et al., Functional and structural characterisation of a bacterial O-methyltransferase and factors determining regioselectivity. FEBS Lett. (2017)

Release Date

2017-05-24

Peptides

Putative O-methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative O-methyltransferase

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