SMTL ID : 5lht.1

ATP Phosphoribosyltransferase from Mycobacterium tuberculosis in complex with the allosteric activator 3-(2-Thienyl)-L-alanine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

homo-hexamer

Ligands

6 x TIH: BETA(2-THIENYL)ALANINE(Non-covalent)

TIH.1: 16 residues within 4Å: Chain A: D.226, Y.227, D.228, L.252, A.283, L.285 Chain C: M.224, G.243, L.244, E.245, S.246, P.247, T.248, R.261, A.262, L.263 7 PLIP interactions: 1 interactions with chain A, 6 interactions with chain C Hydrogen bonds: A:D.228, C:L.244, C:E.245, C:S.246, C:T.248, C:T.248, C:L.263 TIH.7: 16 residues within 4Å: Chain A: M.224, G.243, L.244, E.245, S.246, P.247, T.248, R.261, A.262, L.263 Chain B: D.226, Y.227, D.228, L.252, A.283, L.285 7 PLIP interactions: 1 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:D.228, A:L.244, A:E.245, A:S.246, A:T.248, A:T.248, A:L.263 TIH.13: 16 residues within 4Å: Chain B: M.224, G.243, L.244, E.245, S.246, P.247, T.248, R.261, A.262, L.263 Chain C: D.226, Y.227, D.228, L.252, A.283, L.285 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:L.244, B:E.245, B:S.246, B:T.248, B:T.248, B:L.263, C:D.228 TIH.19: 16 residues within 4Å: Chain D: D.226, Y.227, D.228, L.252, A.283, L.285 Chain F: M.224, G.243, L.244, E.245, S.246, P.247, T.248, R.261, A.262, L.263 8 PLIP interactions: 7 interactions with chain F, 1 interactions with chain D Hydrogen bonds: F:L.244, F:E.245, F:S.246, F:T.248, F:T.248, F:T.248, F:L.263, D:D.228 TIH.25: 16 residues within 4Å: Chain D: M.224, G.243, L.244, E.245, S.246, P.247, T.248, R.261, A.262, L.263 Chain E: D.226, Y.227, D.228, L.252, A.283, L.285 8 PLIP interactions: 7 interactions with chain D, 1 interactions with chain E Hydrogen bonds: D:L.244, D:E.245, D:S.246, D:T.248, D:T.248, D:T.248, D:L.263, E:D.228 TIH.31: 16 residues within 4Å: Chain E: M.224, G.243, L.244, E.245, S.246, P.247, T.248, R.261, A.262, L.263 Chain F: D.226, Y.227, D.228, L.252, A.283, L.285 8 PLIP interactions: 1 interactions with chain F, 7 interactions with chain E Hydrogen bonds: F:D.228, E:L.244, E:E.245, E:S.246, E:T.248, E:T.248, E:T.248, E:L.263

24 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: P.127, R.131, R.145 Chain D: R.145 Ligands: SO4.20 Ligand excluded by PLIP SO4.3: 5 residues within 4Å: Chain A: G.167, S.168, G.169, R.170, T.171 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: Q.155 Chain D: R.13, E.54, E.71 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: F.97, G.98, S.99 Ligand excluded by PLIP SO4.8: 5 residues within 4Å: Chain B: P.127, R.131, R.145 Chain F: R.145 Ligands: SO4.32 Ligand excluded by PLIP SO4.9: 5 residues within 4Å: Chain B: G.167, S.168, G.169, R.170, T.171 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain B: Q.155 Chain F: R.13, E.54, E.71 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain B: F.97, G.98, S.99 Ligand excluded by PLIP SO4.14: 5 residues within 4Å: Chain C: P.127, R.131, R.145 Chain E: R.145 Ligands: SO4.26 Ligand excluded by PLIP SO4.15: 5 residues within 4Å: Chain C: G.167, S.168, G.169, R.170, T.171 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain C: Q.155 Chain E: R.13, E.54, E.71 Ligand excluded by PLIP SO4.17: 3 residues within 4Å: Chain C: F.97, G.98, S.99 Ligand excluded by PLIP SO4.20: 5 residues within 4Å: Chain A: R.145 Chain D: P.127, R.131, R.145 Ligands: SO4.2 Ligand excluded by PLIP SO4.21: 5 residues within 4Å: Chain D: G.167, S.168, G.169, R.170, T.171 Ligand excluded by PLIP SO4.22: 4 residues within 4Å: Chain A: R.13, E.54, E.71 Chain D: Q.155 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain D: F.97, G.98, S.99 Ligand excluded by PLIP SO4.26: 5 residues within 4Å: Chain C: R.145 Chain E: P.127, R.131, R.145 Ligands: SO4.14 Ligand excluded by PLIP SO4.27: 5 residues within 4Å: Chain E: G.167, S.168, G.169, R.170, T.171 Ligand excluded by PLIP SO4.28: 4 residues within 4Å: Chain C: R.13, E.54, E.71 Chain E: Q.155 Ligand excluded by PLIP SO4.29: 3 residues within 4Å: Chain E: F.97, G.98, S.99 Ligand excluded by PLIP SO4.32: 5 residues within 4Å: Chain B: R.145 Chain F: P.127, R.131, R.145 Ligands: SO4.8 Ligand excluded by PLIP SO4.33: 5 residues within 4Å: Chain F: G.167, S.168, G.169, R.170, T.171 Ligand excluded by PLIP SO4.34: 4 residues within 4Å: Chain B: R.13, E.54, E.71 Chain F: Q.155 Ligand excluded by PLIP SO4.35: 3 residues within 4Å: Chain F: F.97, G.98, S.99 Ligand excluded by PLIP

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 3 residues within 4Å: Chain A: T.113, T.114, G.181 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.114, A:T.114, A:G.181 Water bridges: A:A.115 GOL.12: 3 residues within 4Å: Chain B: T.113, T.114, G.181 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.114, B:T.114, B:G.181 Water bridges: B:A.115 GOL.18: 3 residues within 4Å: Chain C: T.113, T.114, G.181 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:T.114, C:T.114, C:G.181 Water bridges: C:A.115 GOL.24: 3 residues within 4Å: Chain D: T.113, T.114, G.181 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:T.113, D:T.114, D:G.181 Water bridges: D:A.115 GOL.30: 3 residues within 4Å: Chain E: T.113, T.114, G.181 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:T.113, E:T.114, E:G.181 Water bridges: E:A.115 GOL.36: 3 residues within 4Å: Chain F: T.113, T.114, G.181 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:T.113, F:T.114, F:G.181 Water bridges: F:A.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pisco, J.P. et al., Uncoupling conformational states from activity in an allosteric enzyme. Nat Commun (2017)

Release Date

2017-07-05

Peptides

ATP phosphoribosyltransferase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

ATP phosphoribosyltransferase

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