SMTL ID : 5li9.1

Structure of a nucleotide-bound form of PKCiota core kinase domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

1 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)

ACP.1: 20 residues within 4Å: Chain A: I.14, G.15, R.16, G.17, S.18, Y.19, A.20, V.22, A.35, K.37, W.52, V.70, I.86, E.87, Y.88, V.89, L.139, T.149, D.150, F.306 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:S.18, A:Y.19, A:A.20, A:K.37, A:E.87, A:V.89, A:D.150 Water bridges: A:R.16, A:D.93, A:D.93, A:D.93, A:D.136, A:N.137, A:D.150, A:D.150 Salt bridges: A:K.37

7 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 3 residues within 4Å: Chain A: S.240, V.241, K.242 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.240, A:V.241, A:K.242 Water bridges: A:S.240, A:K.242 FMT.3: 6 residues within 4Å: Chain A: R.131, D.132, L.133, G.169, T.170, Y.173 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.170, A:T.170 Water bridges: A:R.131, A:R.131, A:C.168 FMT.4: 5 residues within 4Å: Chain A: E.79, V.325, R.326, I.328, Q.330 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.79, A:I.328, A:Q.330 Water bridges: A:Q.330 FMT.5: 3 residues within 4Å: Chain A: R.237, S.238, L.239 No protein-ligand interaction detected (PLIP) FMT.6: 1 residues within 4Å: Chain A: K.57 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.57 FMT.7: 5 residues within 4Å: Chain A: S.249, N.252, E.257, R.258, L.259 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.249, A:N.252 FMT.8: 1 residues within 4Å: Chain A: C.168 No protein-ligand interaction detected (PLIP)

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.9: 1 residues within 4Å: Chain A: T.166 No protein-ligand interaction detected (PLIP)

1 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.10: 6 residues within 4Å: Chain A: M.95, L.135, E.199, G.203, R.204 Ligands: PEG.11 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:E.199

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.11: 9 residues within 4Å: Chain A: M.95, K.134, L.135, D.136, N.172, Y.173, E.199, S.205 Ligands: MRD.10 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.136, A:D.136, A:E.199 PEG.12: 5 residues within 4Å: Chain A: R.26, D.31, I.33, E.300, F.301 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.26, A:D.31, A:D.31 PEG.13: 3 residues within 4Å: Chain A: S.18, E.42, L.43 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.18, A:E.42

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.14: 6 residues within 4Å: Chain A: Y.34, G.71, L.72, H.73, E.87, N.340 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.71 ACT.15: 4 residues within 4Å: Chain A: V.53, Q.54, E.332, F.336 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Soriano, E.V. et al., aPKC Inhibition by Par3 CR3 Flanking Regions Controls Substrate Access and Underpins Apical-Junctional Polarization. Dev.Cell (2016)

Release Date

2016-09-14

Peptides

Protein kinase C iota type: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein kinase C iota type