SMTL ID : 5ljn.1 (1 other biounit)

Structure of the HOIP PUB domain bound to SPATA2 PIM peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x ASP- VAL- ASP- LEU- TYR- THR- ASP- SER: Spermatogenesis-associated protein 2(Non-covalent)

ASP-VAL-ASP-LEU-TYR-THR-ASP-SER.1: 13 residues within 4Å: Chain A: Y.79, N.82, P.89, Y.91, W.92, G.94, V.95, K.96, N.98, N.99, V.101, Y.121 Ligands: GOL.3 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.79, A:P.89, A:Y.91, A:Y.91, A:V.95, A:K.96, A:V.101, A:V.101 Hydrogen bonds: A:Y.79, A:N.82, A:K.96, A:N.98, A:N.99 Salt bridges: A:K.78

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.88, W.92 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.92 Salt bridges: A:R.88

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: I.75, K.78 Ligands: ASP-VAL-ASP-LEU-TYR-THR-ASP-SER.1, ASP-VAL-ASP-LEU-TYR-THR-ASP-SER.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Elliott, P.R. et al., SPATA2 Links CYLD to LUBAC, Activates CYLD, and Controls LUBAC Signaling. Mol.Cell (2016)

Release Date

2016-08-24

Peptides

E3 ubiquitin-protein ligase RNF31: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase RNF31

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