SMTL ID : 5lk4.1

Structure of the Red Fluorescent Protein mScarlet at pH 7.8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 7 residues within 4Å: Chain A: P.48, L.49, P.50, M.129, Q.130, K.131, D.200 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.131

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: R.142, N.187, R.213, S.215, T.216, G.217 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.187, A:S.215, A:T.216, A:G.217 Salt bridges: A:R.142, A:R.213

4 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 7 residues within 4Å: Chain A: G.148, A.176, K.177, K.178, P.179, V.180, M.182 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.180 PGE.4: 11 residues within 4Å: Chain A: L.49, F.51, S.52, W.53, D.54, K.131, T.133, M.134, G.135, I.194, Y.201 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.49, A:W.53 Water bridges: A:L.49, A:D.54 PGE.5: 1 residues within 4Å: Chain A: K.175 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.175 PGE.6: 6 residues within 4Å: Chain A: A.138, S.139, T.140, D.189, R.190, R.209 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.140

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 6 residues within 4Å: Chain A: N.91, F.92, E.93, K.155, L.167, D.169 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bindels, D.S. et al., mScarlet: a bright monomeric red fluorescent protein for cellular imaging. Nat. Methods (2017)

Release Date

2016-12-07

Peptides

mScarlet: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

mScarlet