SMTL ID : 5lk5.1

Crystal structure of the globular domain of human calreticulin mutant D71K

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-10-mer

Ligands

10 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: Q.17, K.53, K.55, D.225 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Q.17, A:K.55, A:D.225, A:D.225, H2O.1 CA.2: 4 residues within 4Å: Chain B: Q.17, K.53, K.55, D.225 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:Q.17, B:K.55, B:D.225, H2O.5, H2O.6 CA.3: 4 residues within 4Å: Chain C: Q.17, K.53, K.55, D.225 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:Q.17, C:K.55, C:D.225, H2O.9, H2O.9 CA.4: 4 residues within 4Å: Chain D: Q.17, K.53, K.55, D.225 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:Q.17, D:K.55, D:D.225, D:D.225, H2O.13 CA.5: 4 residues within 4Å: Chain E: Q.17, K.53, K.55, D.225 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:Q.17, E:K.55, E:D.225, E:D.225, H2O.18 CA.7: 4 residues within 4Å: Chain F: Q.17, K.53, K.55, D.225 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:Q.17, F:K.55, F:D.225, F:D.225, H2O.22 CA.8: 4 residues within 4Å: Chain G: Q.17, K.53, K.55, D.225 5 PLIP interactions: 3 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:Q.17, G:K.55, G:D.225, H2O.25, H2O.25 CA.9: 4 residues within 4Å: Chain H: Q.17, K.53, K.55, D.225 5 PLIP interactions: 4 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:Q.17, H:K.53, H:K.55, H:D.225, H2O.29 CA.10: 4 residues within 4Å: Chain I: Q.17, K.53, K.55, D.225 5 PLIP interactions: 4 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:Q.17, I:K.55, I:D.225, I:D.225, H2O.32 CA.11: 4 residues within 4Å: Chain J: Q.17, K.53, K.55, D.225 5 PLIP interactions: 4 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:Q.17, J:K.55, J:D.225, J:D.225, H2O.36

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 1 residues within 4Å: Chain E: L.42 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moreau, C. et al., Structures of parasite calreticulins provide insights into their flexibility and dual carbohydrate/peptide-binding properties. IUCrJ (2016)

Release Date

2016-08-31

Peptides

Calreticulin,Calreticulin: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

Calreticulin,Calreticulin