SMTL ID : 5lkr.1 (1 other biounit)

Human Butyrylcholinesterase complexed with N-Propargyliperidines

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

monomer

Ligands

5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: R.14, I.55, N.57 Ligands: FUL.8 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain A: N.106, N.188, K.190 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 5 residues within 4Å: Chain A: P.335, G.336, S.338, N.341, I.344 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.336 NAG-NAG.5: 5 residues within 4Å: Chain A: Y.477, N.479, N.481, E.482, Q.484 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 2 residues within 4Å: Chain A: N.486, E.506 No protein-ligand interaction detected (PLIP)

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.3: 7 residues within 4Å: Chain A: N.241, N.245, K.248, L.249, F.278, V.280, P.281 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.245, A:F.278, A:V.280 Hydrophobic interactions: A:N.245, A:K.248

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 4 residues within 4Å: Chain A: I.4, N.17, T.24, A.101 No protein-ligand interaction detected (PLIP)

1 x FUL: beta-L-fucopyranose(Non-functional Binders)

FUL.8: 2 residues within 4Å: Ligands: NAG-NAG.1, NAG-NAG.1 No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 8 residues within 4Å: Chain A: N.228, Y.396, C.400, P.401, E.404, W.522, T.523, P.527 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.228 GOL.11: 2 residues within 4Å: Chain A: N.455 Ligands: PEG.12 No protein-ligand interaction detected (PLIP)

1 x 6YC: ~{N}-(2-methoxyethyl)-~{N}-[[(3~{S})-1-prop-2-ynylpiperidin-3-yl]methyl]naphthalene-2-carboxamide(Non-covalent)

6YC.10: 12 residues within 4Å: Chain A: N.68, I.69, D.70, G.116, G.117, T.120, S.198, W.231, P.285, S.287, F.329, F.398 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.120, A:F.398 Salt bridges: A:D.70 pi-Stacking: A:W.231, A:F.329

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.12: 1 residues within 4Å: Ligands: GOL.11 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kosak, U. et al., N-Propargylpiperidines with naphthalene-2-carboxamide or naphthalene-2-sulfonamide moieties: Potential multifunctional anti-Alzheimer's agents. Bioorg. Med. Chem. (2017)

Release Date

2016-12-14

Peptides

Cholinesterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cholinesterase

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