SMTL ID : 5lkt.1

Crystal structure of the p300 acetyltransferase catalytic core with butyryl-coenzyme A.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.145, C.151, C.169, C.172 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.145, A:C.151, A:C.169, A:C.172 ZN.2: 4 residues within 4Å: Chain A: C.215, C.218, C.240, C.243 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.215, A:C.218, A:C.240, A:C.243 ZN.3: 4 residues within 4Å: Chain A: C.131, C.132, H.223, C.226 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.131, A:C.132, A:H.223, A:C.226 ZN.4: 2 residues within 4Å: Chain A: H.283, C.376 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.283, A:C.376

1 x BCO: Butyryl Coenzyme A(Non-covalent)

BCO.5: 21 residues within 4Å: Chain A: I.363, S.364, Y.365, L.366, D.367, S.368, R.378, T.379, Y.382, W.404, C.406, P.408, Y.414, Q.423, K.424, I.425, P.426, R.430, L.431, W.434, F.435 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:L.366, A:Y.382, A:W.404, A:L.431 Hydrogen bonds: A:L.366, A:L.366, A:S.368, A:R.378, A:T.379, A:Q.423, A:K.424, A:I.425 Water bridges: A:R.378, A:Y.382, A:K.424, A:K.427, A:K.427, A:R.430, A:R.430, A:R.430 Salt bridges: A:R.378 pi-Cation interactions: A:R.430, A:R.430

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 7 residues within 4Å: Chain A: I.60, V.61, K.62, S.63, L.91, N.95, L.98 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.60, A:K.62, A:S.63, A:S.63, A:N.95 GOL.7: 9 residues within 4Å: Chain A: K.299, Y.323, T.325, H.345, V.346, Q.347, S.364, Y.365, G.538 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.299, A:K.299, A:Y.323, A:T.325, A:V.346, A:S.364, A:S.364 GOL.8: 7 residues within 4Å: Chain A: E.288, V.289, T.290, F.331, E.332, E.333, D.338 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.288, A:E.288, A:T.290 Water bridges: A:A.258, A:E.333, A:E.333

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.9: 7 residues within 4Å: Chain A: Y.362, H.402, I.403, I.454, D.475, F.507, F.508 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:D.475

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaczmarska, Z. et al., Structure of p300 in complex with acyl-CoA variants. Nat. Chem. Biol. (2017)

Release Date

2016-11-02

Peptides

Histone acetyltransferase p300,Histone acetyltransferase p300: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone acetyltransferase p300,Histone acetyltransferase p300

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