- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.96 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x 9PI: bis[oxidanyl-[oxidanyl-[oxidanyl(phosphonooxy)phosphoryl]oxy-phosphoryl]oxy-phosphoryl] hydrogen phosphate(Non-covalent)
9PI.1: 21 residues within 4Å:- Chain A: R.26, Y.29, E.30, K.33, R.61, D.62, A.63, A.64, G.65, K.66, G.67, G.68, R.72, R.174, R.178, K.184, K.187, K.228, K.229, R.232
- Chain B: H.76
43 PLIP interactions:43 interactions with chain A- Hydrogen bonds: A:Y.29, A:A.63, A:A.64, A:G.65, A:K.66, A:G.67, A:G.68
- Water bridges: A:D.62, A:K.66, A:K.229, A:K.229, A:R.232
- Salt bridges: A:R.26, A:R.26, A:K.33, A:K.66, A:R.72, A:R.72, A:R.72, A:R.72, A:R.72, A:R.178, A:R.178, A:R.178, A:K.184, A:K.184, A:K.184, A:K.184, A:K.187, A:K.187, A:K.187, A:K.187, A:K.228, A:K.228, A:K.228, A:K.228, A:K.228, A:K.229, A:K.229, A:R.232, A:R.232, A:R.232, A:R.232
9PI.2: 21 residues within 4Å:- Chain A: H.76
- Chain B: R.26, Y.29, E.30, K.33, R.61, D.62, A.63, A.64, G.65, K.66, G.67, G.68, R.72, R.174, R.178, K.184, K.187, K.228, K.229, R.232
35 PLIP interactions:35 interactions with chain B- Hydrogen bonds: B:R.26, B:Y.29, B:R.61, B:A.63, B:A.64, B:G.65, B:K.66, B:G.67, B:G.68
- Water bridges: B:G.68, B:R.72, B:R.72
- Salt bridges: B:R.26, B:K.33, B:K.66, B:R.72, B:R.72, B:R.72, B:R.72, B:R.178, B:R.178, B:R.178, B:K.184, B:K.184, B:K.187, B:K.228, B:K.228, B:K.228, B:K.228, B:K.228, B:K.229, B:K.229, B:R.232, B:R.232, B:R.232
9PI.3: 20 residues within 4Å:- Chain C: R.26, Y.29, E.30, K.33, D.62, A.63, A.64, G.65, K.66, G.67, G.68, R.72, R.174, R.178, K.184, K.187, K.228, K.229, R.232
- Chain D: H.76
42 PLIP interactions:42 interactions with chain C- Hydrogen bonds: C:Y.29, C:E.30, C:A.63, C:A.64, C:G.65, C:K.66, C:G.67, C:G.68
- Water bridges: C:R.72, C:R.72, C:K.228, C:R.232, C:R.232, C:R.232, C:R.232
- Salt bridges: C:R.26, C:K.33, C:K.66, C:R.72, C:R.72, C:R.72, C:R.72, C:R.178, C:R.178, C:R.178, C:K.184, C:K.184, C:K.184, C:K.187, C:K.187, C:K.187, C:K.187, C:K.228, C:K.228, C:K.228, C:K.228, C:K.228, C:K.229, C:K.229, C:R.232, C:R.232, C:R.232
9PI.4: 21 residues within 4Å:- Chain C: H.76
- Chain D: R.26, Y.29, E.30, K.33, R.61, D.62, A.63, A.64, G.65, K.66, G.67, G.68, R.72, R.174, R.178, K.184, K.187, K.228, K.229, R.232
43 PLIP interactions:42 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:R.26, D:Y.29, D:E.30, D:A.63, D:A.64, D:G.65, D:K.66, D:G.67, D:G.68
- Water bridges: D:K.184, D:K.184, D:K.187, D:K.187, D:K.228, D:K.228, C:H.76
- Salt bridges: D:R.26, D:K.33, D:K.66, D:R.72, D:R.72, D:R.72, D:R.72, D:R.72, D:R.178, D:R.178, D:R.178, D:K.184, D:K.184, D:K.187, D:K.187, D:K.187, D:K.187, D:K.228, D:K.228, D:K.228, D:K.229, D:K.229, D:K.229, D:R.232, D:R.232, D:R.232, D:R.232
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Parnell, A.E. et al., Substrate recognition and mechanism revealed by ligand-bound polyphosphate kinase 2 structures. Proc. Natl. Acad. Sci. U.S.A. (2018)
- Release Date
- 2017-10-11
- Peptides
- Polyphosphate kinase 2: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.96 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x 9PI: bis[oxidanyl-[oxidanyl-[oxidanyl(phosphonooxy)phosphoryl]oxy-phosphoryl]oxy-phosphoryl] hydrogen phosphate(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Parnell, A.E. et al., Substrate recognition and mechanism revealed by ligand-bound polyphosphate kinase 2 structures. Proc. Natl. Acad. Sci. U.S.A. (2018)
- Release Date
- 2017-10-11
- Peptides
- Polyphosphate kinase 2: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D