SMTL ID : 5llv.1

Crystal structure of DACM F87M/L110M Transthyretin mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: E.93, V.94, V.95 Chain B: H.91, Y.117 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain C: H.91, Y.117 Chain D: E.93, V.94, V.95 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain B: M.111 Chain C: A.109, S.118, T.119, T.120 Ligand excluded by PLIP

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 8 residues within 4Å: Chain A: M.111, L.112, S.113, S.116, Y.117, S.118 Chain C: S.116 Ligands: ACT.6 No protein-ligand interaction detected (PLIP) ACT.3: 7 residues within 4Å: Chain B: M.111, L.112, S.116, Y.117, S.118 Chain D: S.118 Ligands: ACT.7 4 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C, 2 interactions with chain B Hydrogen bonds: D:S.118, B:Y.117 Water bridges: C:S.118 Hydrophobic interactions: B:M.111 ACT.6: 4 residues within 4Å: Chain C: M.111, S.116, Y.117 Ligands: ACT.2 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:M.111 Hydrogen bonds: C:S.116 Water bridges: B:S.118 ACT.7: 9 residues within 4Å: Chain B: S.116 Chain D: A.20, M.111, L.112, S.113, S.116, Y.117, S.118 Ligands: ACT.3 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:S.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ghadami, S.A. et al., FRET studies of various conformational states adopted by transthyretin. Cell. Mol. Life Sci. (2017)

Release Date

2017-06-07

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Transthyretin