- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x LBV: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid(Covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
GTP.3: 20 residues within 4Å:- Chain A: D.566, L.567, D.568, K.569, F.570, K.571, N.574, H.579, D.583, L.586, R.605, G.608, E.609, K.675, R.679
- Chain B: R.539, W.606, E.610, D.668
- Ligands: MG.4
20 PLIP interactions:6 interactions with chain B, 14 interactions with chain A- Hydrogen bonds: B:R.539, B:R.539, B:W.606, B:D.668, A:D.568, A:D.568, A:K.569, A:K.569, A:F.570, A:K.571, A:N.574, A:N.574, A:R.605, A:R.605
- pi-Cation interactions: B:R.539, B:R.539
- Salt bridges: A:K.571, A:D.583, A:K.675, A:R.679
GTP.7: 22 residues within 4Å:- Chain A: R.539, W.606, E.610, D.668
- Chain B: L.533, D.566, L.567, D.568, K.569, F.570, K.571, N.574, H.579, G.582, D.583, L.586, R.605, G.608, E.609, K.675, R.679
- Ligands: MG.8
15 PLIP interactions:11 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:K.569, B:F.570, B:K.571, B:N.574, B:N.574, B:R.605, B:R.605, A:R.539, A:W.606, A:D.668
- Salt bridges: B:K.571, B:D.583, B:K.675, B:R.679
- pi-Cation interactions: A:R.539
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 4 residues within 4Å:- Chain A: D.566, L.567, E.609
- Ligands: GTP.3
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.566, A:L.567, A:E.609
MG.8: 4 residues within 4Å:- Chain B: D.566, L.567, E.609
- Ligands: GTP.7
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:D.566, B:L.567, B:E.609
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gourinchas, G. et al., Long-range allosteric signaling in red light-regulated diguanylyl cyclases. Sci Adv (2017)
- Release Date
- 2017-03-15
- Peptides
- Diguanylate cyclase (GGDEF) domain-containing protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x LBV: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid(Covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gourinchas, G. et al., Long-range allosteric signaling in red light-regulated diguanylyl cyclases. Sci Adv (2017)
- Release Date
- 2017-03-15
- Peptides
- Diguanylate cyclase (GGDEF) domain-containing protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B