- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-dimer
- Ligands
- 8 x HEC: HEME C(Covalent)
- 11 x CL: CHLORIDE ION(Non-functional Binders)
CL.5: 3 residues within 4Å:- Chain A: W.113, A.120, R.123
Ligand excluded by PLIPCL.6: 2 residues within 4Å:- Chain A: W.154, G.168
Ligand excluded by PLIPCL.9: 1 residues within 4Å:- Chain A: R.158
Ligand excluded by PLIPCL.10: 1 residues within 4Å:- Ligands: EDO.21
Ligand excluded by PLIPCL.11: 2 residues within 4Å:- Chain A: P.427, R.428
Ligand excluded by PLIPCL.12: 2 residues within 4Å:- Chain A: G.131, G.133
Ligand excluded by PLIPCL.13: 1 residues within 4Å:- Chain A: D.339
Ligand excluded by PLIPCL.31: 3 residues within 4Å:- Chain B: W.113, A.120, R.123
Ligand excluded by PLIPCL.33: 2 residues within 4Å:- Chain B: L.35, H.62
Ligand excluded by PLIPCL.34: 2 residues within 4Å:- Chain B: R.249
- Ligands: CL.35
Ligand excluded by PLIPCL.35: 3 residues within 4Å:- Chain B: R.249, N.294
- Ligands: CL.34
Ligand excluded by PLIP- 4 x PGO: S-1,2-PROPANEDIOL(Non-covalent)
PGO.7: 4 residues within 4Å:- Chain A: T.50, R.54, G.161, P.163
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:P.163
- Hydrogen bonds: A:R.54, A:R.54
PGO.14: 4 residues within 4Å:- Chain A: G.155, A.171, G.172, L.174
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.155, A:L.174
PGO.36: 4 residues within 4Å:- Chain B: D.339, P.427, R.428, V.515
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:P.427, B:R.428
PGO.37: 4 residues within 4Å:- Chain B: F.244, P.246, R.296, A.298
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:A.298
- Hydrogen bonds: B:F.244
- 2 x THJ: THIOSULFATE(Non-covalent)
THJ.8: 9 residues within 4Å:- Chain A: K.316, R.326, G.329, C.330, Y.333, S.334, A.434, G.435
- Ligands: HEC.3
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.334, A:G.435
- Water bridges: A:M.436
- Salt bridges: A:K.316, A:R.326
THJ.32: 9 residues within 4Å:- Chain B: K.316, R.326, G.329, C.330, Y.333, S.334, A.434, G.435
- Ligands: HEC.29
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.334, B:G.435
- Salt bridges: B:K.316, B:R.326
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.15: 5 residues within 4Å:- Chain A: A.132, V.135, L.404, C.405, G.407
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:L.404, A:G.412
EDO.16: 5 residues within 4Å:- Chain A: A.373, M.374, S.375, G.376, R.377
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.243, A:A.373, A:G.376
EDO.17: 8 residues within 4Å:- Chain A: Y.310, P.311, T.322, M.323, A.324, Q.357
- Chain B: W.307, Q.357
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.310, A:M.323, A:A.324
EDO.18: 4 residues within 4Å:- Chain A: P.114, F.244, P.246, R.296
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:F.244
- Water bridges: A:D.293, A:R.296
EDO.19: 4 residues within 4Å:- Chain A: R.26, D.32, E.33, N.92
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.26, A:E.33, A:N.92
EDO.20: 3 residues within 4Å:- Chain A: Q.338, S.340, V.341
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.340
EDO.21: 6 residues within 4Å:- Chain A: R.249, A.265, N.294, R.296, Y.359
- Ligands: CL.10
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.249, A:N.294, A:R.296, A:R.296
EDO.22: 3 residues within 4Å:- Chain A: W.362, T.365
- Chain B: G.370
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.365
EDO.23: 1 residues within 4Å:- Chain A: Q.513
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.513
EDO.24: 1 residues within 4Å:- Chain A: R.393
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.393
EDO.25: 4 residues within 4Å:- Chain A: E.325, Q.328, G.329, R.332
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.328
EDO.38: 5 residues within 4Å:- Chain B: R.381, L.382, D.440, W.464, F.497
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:L.382, B:D.440
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kurth, J.M. et al., Electron Accepting Units of the Diheme Cytochrome c TsdA, a Bifunctional Thiosulfate Dehydrogenase/Tetrathionate Reductase. J.Biol.Chem. (2016)
- Release Date
- 2016-10-12
- Peptides
- Cytochrome C: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-dimer
- Ligands
- 8 x HEC: HEME C(Covalent)
- 11 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x PGO: S-1,2-PROPANEDIOL(Non-covalent)
- 2 x THJ: THIOSULFATE(Non-covalent)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kurth, J.M. et al., Electron Accepting Units of the Diheme Cytochrome c TsdA, a Bifunctional Thiosulfate Dehydrogenase/Tetrathionate Reductase. J.Biol.Chem. (2016)
- Release Date
- 2016-10-12
- Peptides
- Cytochrome C: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B