SMTL ID : 5lq7.1

Salmonella effector SpvD - G161 variant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 11 residues within 4Å: Chain A: N.75, A.76, P.102, T.103, Y.155, A.157, I.160, S.163, G.164, H.165, W.187 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:A.76, A:T.103, A:G.164, A:H.165, A:W.187 Water bridges: A:V.77, A:V.77, A:T.103, A:G.164

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 4 residues within 4Å: Chain A: I.47, Y.49, Q.91, D.92 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.91 Water bridges: A:N.57

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: T.68, Y.69, Y.72 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.68, A:T.68, A:Y.72 NA.4: 2 residues within 4Å: Chain A: N.191, H.202 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.191, A:H.202

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain A: P.102, T.103 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grabe, G.J. et al., The Salmonella Effector SpvD Is a Cysteine Hydrolase with a Serovar-specific Polymorphism Influencing Catalytic Activity, Suppression of Immune Responses, and Bacterial Virulence. J. Biol. Chem. (2016)

Release Date

2016-11-02

Peptides

Virulence protein vsdE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Virulence protein vsdE