SMTL ID : 5lqc.1

Crystal Structure of COMT in complex with N-[(E)-3-[(2R,3S,4R,5R)-3,4-dihydroxy-5-[6-(methylamino)purin-9-yl]oxolan-2-yl]prop-2-enyl]-5-(4-fluorophenyl)-2,3-dihydroxybenzamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x 542: N-[(E)-3-[(2R,3S,4R,5R)-3,4-dihydroxy-5-(6-methylaminopurin-9-yl)oxolan-2-yl]prop-2-enyl]-5-(4-fluorophenyl)-2,3-dihydroxy-benzamide(Non-covalent)

542.1: 24 residues within 4Å: Chain A: W.38, M.40, G.66, Y.68, M.89, E.90, M.91, N.92, Y.95, G.117, A.118, S.119, Q.120, D.141, H.142, W.143, K.144, R.146, D.169, N.170, P.174, L.198, E.199 Ligands: MG.2 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:W.38, A:W.38, A:M.40, A:W.143, A:P.174, A:L.198 Hydrogen bonds: A:Y.68, A:M.91, A:N.92, A:S.119, A:S.119, A:D.141, A:W.143, A:K.144, A:N.170 Water bridges: A:N.92, A:Q.120, A:D.169, A:D.169 542.3: 24 residues within 4Å: Chain B: W.38, M.40, G.66, Y.68, M.89, E.90, M.91, N.92, Y.95, G.117, A.118, S.119, Q.120, D.141, H.142, W.143, K.144, R.146, D.169, N.170, P.174, L.198, E.199 Ligands: MG.4 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:W.38, B:W.38, B:M.40, B:W.143, B:P.174, B:L.198 Hydrogen bonds: B:Y.68, B:M.91, B:N.92, B:S.119, B:S.119, B:D.141, B:W.143, B:K.144, B:N.170 Water bridges: B:N.92, B:Q.120

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: D.141, K.144, D.169, N.170 Ligands: 542.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.141, A:D.169, H2O.1 MG.4: 5 residues within 4Å: Chain B: D.141, K.144, D.169, N.170 Ligands: 542.3 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.141, B:D.169, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ellermann, M. et al., no title yet. To be published

Release Date

2016-08-31

Peptides

Catechol O-methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Catechol O-methyltransferase

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