SMTL ID : 5lr0.2 (1 other biounit)

Binding domain of Botulinum Neurotoxin DC in complex with SialylT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

monomer

Ligands

1 x NGA- GAL: beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose(Non-covalent)

NGA-GAL.1: 2 residues within 4Å: Chain A: Y.262 Ligands: SIA.2 No protein-ligand interaction detected (PLIP)

1 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)

SIA.2: 12 residues within 4Å: Chain A: N.261, Y.262, S.386, I.387, G.388, S.389, Y.390, V.408, L.417, S.420, S.422 Ligands: NGA-GAL.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.408 Hydrogen bonds: A:N.261, A:S.386, A:I.387, A:S.389, A:Y.390, A:S.420, A:S.420, A:S.422

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, S. et al., Structural basis for the unique ganglioside and cell membrane recognition mechanism of botulinum neurotoxin DC. Nat Commun (2017)

Release Date

2017-08-30

Peptides

Botulinum neurotoxin D/C protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Botulinum neurotoxin D/C protein

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