SMTL ID : 5ltu.1

Crystal Structure of NUDT4A- Diphosphoinositol polyphosphate phosphohydrolase 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

homo-dimer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: R.20, G.50, G.51, G.52 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.20, A:G.50 Water bridges: A:G.52 EDO.2: 3 residues within 4Å: Chain A: E.85, E.138 Ligands: EDO.3 No protein-ligand interaction detected (PLIP) EDO.3: 3 residues within 4Å: Chain A: I.83, E.85 Ligands: EDO.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.85 Water bridges: A:I.83 EDO.4: 5 residues within 4Å: Chain A: E.70, A.71, G.72, R.115, R.117 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.115, A:R.117 EDO.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.6: 4 residues within 4Å: Chain B: R.20, R.89, K.133, H.136 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.89, B:R.89, B:K.133, B:H.136 Water bridges: B:T.93 EDO.7: 1 residues within 4Å: Chain B: R.115 1 PLIP interactions: 1 interactions with chain B Water bridges: B:E.108 EDO.8: 3 residues within 4Å: Chain B: S.39, S.40, Q.45 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.40, B:Q.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Srikannathasan, V. et al., Crystal Structure of Human NUDT4A- Diphosphoinositol polyphosphate phosphohydrolase 2. To Be Published

Release Date

2017-09-20

Peptides

Diphosphoinositol polyphosphate phosphohydrolase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Diphosphoinositol polyphosphate phosphohydrolase 2