SMTL ID : 5luh.1 (1 other biounit)

AadA E87Q in complex with ATP, calcium and streptomycin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.47, D.49 Ligands: CA.2, ATP.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.47, A:D.49, A:D.49, H2O.2 CA.2: 6 residues within 4Å: Chain A: D.47, D.49, Q.87 Ligands: CA.1, ATP.3, SRY.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.47, A:D.49, H2O.1

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.3: 23 residues within 4Å: Chain A: G.35, S.36, G.41, S.46, D.47, D.49, Q.87, D.130, L.133, L.134, Q.137, L.166, H.185, T.189, R.192, I.193, T.196, F.202, K.205, Y.231 Ligands: CA.1, CA.2, SRY.4 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:S.36, A:S.36, A:S.36, A:S.46, A:D.47, A:Q.137, A:Q.137, A:T.196, A:Y.231 Water bridges: A:A.37, A:R.192, A:R.192, A:R.192, A:R.192, A:R.192, A:R.192, A:T.196, A:T.196 Salt bridges: A:R.192, A:K.205, A:K.205, A:K.205

1 x SRY: STREPTOMYCIN(Non-covalent)

SRY.4: 14 residues within 4Å: Chain A: D.47, Q.87, Q.108, W.112, D.130, W.173, A.177, D.178, D.182, H.185, I.186, T.189 Ligands: CA.2, ATP.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:T.189 Hydrogen bonds: A:D.47, A:Q.87, A:W.112, A:A.177, A:D.178, A:D.182 Water bridges: A:D.47, A:W.112, A:D.178 Salt bridges: A:H.185, A:H.185

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 4 residues within 4Å: Chain A: P.44, N.45, L.232, G.233 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.45, A:N.45

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 6 residues within 4Å: Chain A: Y.93, V.97, E.151, R.152, L.153, T.155 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 2 residues within 4Å: Chain A: G.41, L.42 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stern, A.L. et al., Structural mechanism of AadA, a dual-specificity aminoglycoside adenylyltransferase fromSalmonella enterica. J.Biol.Chem. (2018)

Release Date

2018-01-17

Peptides

Streptomycin 3''-adenylyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Streptomycin 3''-adenylyltransferase

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