SMTL ID : 5lur.1

An avidin mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-tetramer

Ligands

4 x STR: PROGESTERONE(Non-covalent)

STR.1: 12 residues within 4Å: Chain A: M.18, H.20, Y.37, T.40, V.41, W.74, F.76, T.81, F.83, W.101, N.122 Chain C: W.114 8 PLIP interactions: 1 interactions with chain C, 7 interactions with chain A Hydrophobic interactions: C:W.114, A:W.74, A:W.74, A:F.76, A:F.76, A:T.81, A:W.101 Hydrogen bonds: A:N.122 STR.2: 13 residues within 4Å: Chain B: M.18, H.20, Y.37, A.39, T.40, V.41, W.74, F.76, T.81, F.83, W.101, N.122 Chain D: W.114 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain D Hydrophobic interactions: B:A.39, B:W.74, B:F.76, B:F.76, B:T.81, B:W.101, B:W.101, D:W.114, D:W.114 STR.4: 12 residues within 4Å: Chain A: W.114 Chain C: M.18, H.20, Y.37, T.40, V.41, W.74, F.76, T.81, F.83, W.101, N.122 8 PLIP interactions: 7 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:W.74, C:W.74, C:F.76, C:F.76, C:T.81, C:W.101, A:W.114 Hydrogen bonds: C:N.122 STR.5: 13 residues within 4Å: Chain B: W.114 Chain D: M.18, H.20, Y.37, A.39, T.40, V.41, W.74, F.76, T.81, F.83, W.101, N.122 9 PLIP interactions: 7 interactions with chain D, 2 interactions with chain B Hydrophobic interactions: D:A.39, D:W.74, D:F.76, D:F.76, D:T.81, D:W.101, D:W.101, B:W.114, B:W.114

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain B: K.115 Chain D: R.118 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain B: R.118 Chain D: K.115 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Agrawal, N. et al., An avidin mutant. TO BE PUBLISHED

Release Date

2017-09-20

Peptides

Avidin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Avidin

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