SMTL ID : 5lv4.1

Crystal structure of mouse PRMT6 in complex with inhibitor LH1236

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

homo-dimer

Ligands

2 x 78K: (2~{R})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[[4-azanyl-1-(methoxymethyl)-2-oxidanylidene-pyrimidin-5-yl]methyl]amino]-2-azanyl-butanoic acid(Non-covalent)

78K.1: 28 residues within 4Å: Chain A: V.84, H.85, M.88, R.94, G.118, A.119, G.120, T.121, G.122, I.123, L.124, V.139, E.140, A.141, S.142, G.166, P.167, V.168, E.169, E.183, W.184, M.185, G.186, H.191, E.192, M.194, S.197, W.346 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:E.183 Hydrogen bonds: A:G.118, A:T.121, A:T.121, A:A.141, A:S.142, A:S.142, A:S.142, A:V.168, A:E.169 Water bridges: A:H.85, A:R.94, A:G.118, A:T.121, A:T.121, A:G.122, A:I.123, A:L.124, A:E.183, A:E.192, A:R.379, A:R.379 Salt bridges: A:R.94, A:E.140 78K.2: 28 residues within 4Å: Chain B: V.84, H.85, M.88, R.94, G.118, A.119, G.120, T.121, G.122, I.123, L.124, V.139, E.140, A.141, S.142, G.166, P.167, V.168, E.169, E.183, W.184, M.185, G.186, H.191, E.192, M.194, S.197, W.346 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:E.183 Hydrogen bonds: B:G.118, B:T.121, B:T.121, B:A.141, B:S.142, B:S.142, B:S.142, B:V.168, B:E.169 Water bridges: B:H.85, B:R.94, B:G.118, B:T.121, B:T.121, B:G.122, B:I.123, B:L.124, B:E.183, B:E.192, B:R.379, B:R.379 Salt bridges: B:R.94, B:E.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halby, L. et al., Hijacking DNA methyltransferase transition state analogues to produce chemical scaffolds for PRMT inhibitors. Philos. Trans. R. Soc. Lond., B, Biol. Sci. (2018)

Release Date

2017-09-20

Peptides

Protein arginine N-methyltransferase 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein arginine N-methyltransferase 6

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