SMTL ID : 5lv5.1

Crystal structure of mouse PRMT6 in complex with inhibitor LH1458

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x 78G: 2-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]ethyl-[[4-azanyl-1-(methoxymethyl)-2-oxidanylidene-pyrimidin-5-yl]methyl]-[(3~{S})-3-azanyl-4-oxidanyl-4-oxidanylidene-butyl]azanium(Non-covalent)

78G.1: 28 residues within 4Å: Chain A: V.84, H.85, M.88, R.94, D.116, G.118, A.119, G.120, T.121, G.122, I.123, L.124, V.139, E.140, A.141, S.142, G.166, P.167, V.168, E.169, E.183, M.185, G.186, Y.187, M.194, S.197, H.345, W.346 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:G.118, A:T.121, A:T.121, A:T.121, A:A.141, A:S.142, A:S.142, A:V.168, A:E.169, A:E.183, A:W.346 Water bridges: A:R.94, A:G.122, A:I.123, A:L.124, A:E.183, A:Y.187 Salt bridges: A:R.94, A:E.140 78G.2: 28 residues within 4Å: Chain B: V.84, H.85, M.88, R.94, D.116, G.118, A.119, G.120, T.121, G.122, I.123, L.124, V.139, E.140, A.141, S.142, G.166, P.167, V.168, E.169, E.183, M.185, G.186, Y.187, M.194, S.197, H.345, W.346 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:G.118, B:T.121, B:T.121, B:T.121, B:A.141, B:S.142, B:S.142, B:V.168, B:E.169, B:E.183, B:W.346 Water bridges: B:R.94, B:G.122, B:I.123, B:L.124, B:E.183, B:Y.187 Salt bridges: B:R.94, B:E.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halby, L. et al., Hijacking DNA methyltransferase transition state analogues to produce chemical scaffolds for PRMT inhibitors. Philos. Trans. R. Soc. Lond., B, Biol. Sci. (2018)

Release Date

2017-09-20

Peptides

Protein arginine N-methyltransferase 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein arginine N-methyltransferase 6

Related Entries With Identical Sequence