SMTL ID : 5lvs.1

Self-assembled protein-aromatic foldamer complexes with 2:3 and 2:2:1 stoichiometries

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

homo-dimer

Ligands

3 x 4SO- 01- QUJ- QUK- QVS- QVE: Aromatic foldamer(Non-covalent)

4SO-01-QUJ-QUK-QVS-QVE.1: 32 residues within 4Å: Chain A: S.1, H.2, D.18, F.19, Q.91, H.93, H.95, H.118, V.120, F.129, V.141, S.195, L.196, T.197, T.198, P.200, W.207 Chain B: D.128, F.129, G.130, K.131, Q.134 Ligands: 4SO-01-QUJ-QUK-QVS-QVE.2, 4SO-01-QUJ-QUK-QVS-QVE.2, QUJ-QUK-FOR-QUK-QUJ.3, QUJ-QUK-FOR-QUK-QUJ.3, QUJ-QUK-FOR-QUK-QUJ.3, ZN.4, GOL.5, GOL.6, GOL.14, GOL.17 18 PLIP interactions: 5 interactions with chain B, 13 interactions with chain A Hydrophobic interactions: B:F.129, B:F.129, A:D.18, A:F.19, A:V.120, A:L.196, A:P.200 Hydrogen bonds: B:D.128, B:K.131, B:Q.134, A:H.2, A:H.2, A:H.93, A:T.197 Water bridges: A:T.198 Salt bridges: A:H.2 pi-Stacking: A:H.2, A:H.2 4SO-01-QUJ-QUK-QVS-QVE.2: 32 residues within 4Å: Chain A: D.128, F.129, G.130, K.131, Q.134 Chain B: S.1, H.2, D.18, F.19, Q.91, H.93, H.95, H.118, V.120, F.129, V.141, S.195, L.196, T.197, T.198, P.200, W.207 Ligands: 4SO-01-QUJ-QUK-QVS-QVE.1, 4SO-01-QUJ-QUK-QVS-QVE.1, QUJ-QUK-FOR-QUK-QUJ.3, QUJ-QUK-FOR-QUK-QUJ.3, QUJ-QUK-FOR-QUK-QUJ.3, ZN.9, GOL.10, GOL.11, GOL.14, GOL.17 21 PLIP interactions: 16 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:D.18, B:F.19, B:V.120, B:F.129, B:L.196, B:L.196, B:P.200, A:F.129, A:F.129 Hydrogen bonds: B:H.2, B:H.93, B:H.118, B:T.197, A:D.128, A:K.131, A:Q.134 Water bridges: B:T.198, B:T.198 Salt bridges: B:H.2 pi-Stacking: B:H.2, B:H.2 4SO-01-QUJ-QUK-QVS-QVE.3: 8 residues within 4Å: Ligands: 4SO-01-QUJ-QUK-QVS-QVE.1, 4SO-01-QUJ-QUK-QVS-QVE.1, 4SO-01-QUJ-QUK-QVS-QVE.1, 4SO-01-QUJ-QUK-QVS-QVE.2, 4SO-01-QUJ-QUK-QVS-QVE.2, 4SO-01-QUJ-QUK-QVS-QVE.2, GOL.5, GOL.10 No protein-ligand interaction detected (PLIP)

2 x ZN: ZINC ION(Non-covalent)(Non-functional Binders)

ZN.4: 6 residues within 4Å: Chain A: H.93, H.95, E.105, H.118, T.197 Ligands: 4SO-01-QUJ-QUK-QVS-QVE.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.93, A:H.95, A:H.118 ZN.9: 6 residues within 4Å: Chain B: H.93, H.95, H.118, T.197 Ligands: 4SO-01-QUJ-QUK-QVS-QVE.2, GOL.11 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.93, B:H.95, B:H.118

12 x GOL: GLYCEROL(Non-covalent)(Non-functional Binders)

GOL.5: 8 residues within 4Å: Chain A: W.4, F.19, P.199, P.200 Ligands: 4SO-01-QUJ-QUK-QVS-QVE.1, 4SO-01-QUJ-QUK-QVS-QVE.1, QUJ-QUK-FOR-QUK-QUJ.3, QUJ-QUK-FOR-QUK-QUJ.3 2 PLIP interactions: 2 interactions with chain A Water bridges: A:W.4, A:H.63 GOL.6: 8 residues within 4Å: Chain A: N.61, H.63, A.64, N.66, Q.91, H.93, T.198 Ligands: 4SO-01-QUJ-QUK-QVS-QVE.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.61, A:N.66, A:N.66, A:Q.91 GOL.7: 5 residues within 4Å: Chain A: Y.6, P.12, D.241, W.243, P.245 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.6 GOL.8: 6 residues within 4Å: Chain A: T.34, A.37, W.190, A.256, F.258, K.259 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.190, A:K.259 GOL.10: 7 residues within 4Å: Chain B: W.4, F.19, P.199, P.200 Ligands: 4SO-01-QUJ-QUK-QVS-QVE.2, 4SO-01-QUJ-QUK-QVS-QVE.2, QUJ-QUK-FOR-QUK-QUJ.3 No protein-ligand interaction detected (PLIP) GOL.11: 8 residues within 4Å: Chain B: N.61, A.64, N.66, Q.91, H.93, T.198 Ligands: 4SO-01-QUJ-QUK-QVS-QVE.2, ZN.9 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.61, B:N.66, B:N.66, B:Q.91, B:T.198 GOL.12: 5 residues within 4Å: Chain B: Y.6, P.12, D.241, W.243, P.245 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.6 GOL.13: 7 residues within 4Å: Chain B: K.166, N.228, N.230, G.231, E.232, G.233, E.234 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:K.166, B:K.166, B:N.228, B:N.230, B:E.232, B:G.233, B:E.234 GOL.14: 7 residues within 4Å: Chain B: N.66, E.68, I.90, Q.91, F.129 Ligands: 4SO-01-QUJ-QUK-QVS-QVE.1, 4SO-01-QUJ-QUK-QVS-QVE.2 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.66, B:E.68, B:E.68, B:Q.91 GOL.15: 8 residues within 4Å: Chain B: Y.50, D.51, Q.52, A.53, N.176, D.178, P.179, R.180 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Y.50, B:D.51, B:A.53, B:N.176, B:R.180 Water bridges: B:N.176 GOL.16: 6 residues within 4Å: Chain B: T.34, A.37, W.190, A.256, F.258, K.259 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.190, B:K.259, B:K.259 GOL.17: 6 residues within 4Å: Chain A: N.66, I.90, Q.91, F.129 Ligands: 4SO-01-QUJ-QUK-QVS-QVE.1, 4SO-01-QUJ-QUK-QVS-QVE.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.66, A:E.68, A:Q.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jewginski, M. et al., Self-Assembled Protein-Aromatic Foldamer Complexes with 2:3 and 2:2:1 Stoichiometries. J. Am. Chem. Soc. (2017)

Release Date

2017-03-08

Peptides

Carbonic anhydrase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Carbonic anhydrase 2

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