SMTL ID : 5lw0.1 (1 other biounit)

Oryza sativa APL macrodomain in complex with ADP-ribose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x AR6: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE(Non-covalent)

AR6.1: 24 residues within 4Å: Chain A: P.41, S.42, I.43, S.44, T.45, A.46, D.47, F.48, D.79, L.80, G.109, D.110, I.111, A.128, A.129, N.130, G.136, G.137, G.138, G.139, V.140, N.141, A.143, R.200 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:S.44, A:S.44, A:T.45, A:A.46, A:D.47, A:D.47, A:D.47, A:F.48, A:D.79, A:L.80, A:D.110, A:D.110, A:I.111, A:N.130, A:G.136, A:G.136, A:V.140, A:R.200 Water bridges: A:S.42, A:S.42, A:N.141, A:N.141 Salt bridges: A:R.200

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 2 residues within 4Å: Chain A: D.65, T.220 6 PLIP interactions: 6 interactions with chain A Water bridges: A:I.66, A:I.66, A:H.216, A:H.216, A:T.220, A:T.220 PO4.3: 3 residues within 4Å: Chain A: D.57, D.61, H.216 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.61 Water bridges: A:H.216 Salt bridges: A:H.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gunn, A.R. et al., The role of ADP-ribosylation in regulating DNA interstrand crosslink repair. J.Cell.Sci. (2016)

Release Date

2016-10-26

Peptides

Basic helix-loop-helix, putative, expressed: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Basic helix-loop-helix, putative, expressed

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