SMTL ID : 5lwo.1

Structure of Spin-labelled T4 lysozyme mutant L115C-R119C-R1 at 100K

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.18 Å

Oligo State

monomer

Ligands

1 x RXR: [2,2,5,5-tetramethyl-3,4-bis(sulfanylmethyl)-2,5-dihydro-1H-pyrrol-1-yl]oxidanyl radical(Non-covalent)

RXR.1: 7 residues within 4Å: Chain A: K.83, P.86, V.87, C.115, L.118, C.119, Q.122 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.83, A:P.86

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: H.31, A.49, L.66 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: T.142, P.143, N.144, R.145 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: M.120, V.131, N.132, K.135 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: L.15, V.57, I.58, T.59 Ligand excluded by PLIP

1 x HED: 2-HYDROXYETHYL DISULFIDE(Non-covalent)

HED.4: 5 residues within 4Å: Chain A: D.47, K.48, G.51, R.52, N.53 3 PLIP interactions: 3 interactions with chain A Water bridges: A:D.47, A:D.47, A:K.48

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 1 residues within 4Å: Chain A: K.85 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.85

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.8: 4 residues within 4Å: Chain A: I.3, V.75, Y.88, I.100 No protein-ligand interaction detected (PLIP)

2 x K: POTASSIUM ION(Non-covalent)

K.9: 3 residues within 4Å: Chain A: E.11, Y.18, G.30 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.11, H2O.3, H2O.4, H2O.9 K.10: 3 residues within 4Å: Chain A: G.30, L.32, F.104 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:G.30, A:F.104, H2O.2, H2O.2, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Consentius, P. et al., Internal Dynamics of the 3-Pyrroline-N-Oxide Ring in Spin-Labeled Proteins. J Phys Chem Lett (2017)

Release Date

2017-03-08

Peptides

Endolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endolysin

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