SMTL ID : 5lx4.1

Cys-Gly dipeptidase GliJ mutant D38H

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 6 residues within 4Å: Chain A: H.36, H.38, E.147, H.174, H.216, H.237 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.147, A:H.216, A:H.237, H2O.8 FE.6: 6 residues within 4Å: Chain B: H.36, H.38, E.147, H.174, H.216, H.237 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.147, B:H.216, B:H.237, H2O.19

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: Y.59, Q.72, T.120, I.121 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.72, A:T.120 Water bridges: A:D.55, A:Y.59 GOL.3: 4 residues within 4Å: Chain A: R.227, L.228, S.229, R.230 No protein-ligand interaction detected (PLIP) GOL.4: 4 residues within 4Å: Chain A: T.295, Y.299, R.334, G.335 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.295, A:Y.299, A:R.334 GOL.5: 5 residues within 4Å: Chain A: D.252, E.253, H.256, R.296, I.297 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.252, A:H.256, A:R.296 GOL.7: 4 residues within 4Å: Chain B: Y.59, Q.72, T.120, I.121 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.72, B:T.120, B:T.120 Water bridges: B:Y.59, B:Y.59 GOL.8: 4 residues within 4Å: Chain B: R.227, L.228, S.229, R.230 No protein-ligand interaction detected (PLIP) GOL.9: 4 residues within 4Å: Chain B: T.295, Y.299, R.334, G.335 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.295, B:R.334 GOL.10: 5 residues within 4Å: Chain B: D.252, E.253, H.256, R.296, I.297 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.252, B:H.256, B:R.296

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marion, A. et al., Gliotoxin Biosynthesis: Structure, Mechanism, and Metal Promiscuity of Carboxypeptidase GliJ. ACS Chem. Biol. (2017)

Release Date

2017-05-31

Peptides

Dipeptidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Dipeptidase