SMTL ID : 5lx8.1

Crystal structure of BT1762

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: L.339, F.340, S.341, T.342 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.340, A:S.341, A:S.341, A:T.342 Water bridges: A:D.333 SO4.2: 4 residues within 4Å: Chain A: G.442, R.443, I.444, T.445 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.442, A:I.444, A:T.445, A:T.445 Water bridges: A:R.443, A:D.446 SO4.3: 3 residues within 4Å: Chain A: N.440, A.487, Q.488 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.440, A:Q.488 Water bridges: A:D.489 SO4.4: 2 residues within 4Å: Chain A: D.333, S.334 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.334, A:S.334 SO4.5: 4 residues within 4Å: Chain A: Y.291, S.292, I.293, S.417 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.291, A:I.293, A:S.417

3 x NA: SODIUM ION(Non-functional Binders)

NA.6: 7 residues within 4Å: Chain A: V.71, R.72, S.73, C.76, E.93, Y.526, Y.537 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.71, A:E.93, A:Y.526 NA.7: 4 residues within 4Å: Chain A: S.272, F.275, K.371, Y.372 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.275, A:Y.372 NA.8: 6 residues within 4Å: Chain A: D.318, K.321, W.384, Y.393, Y.394, V.395 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.394 Water bridges: A:K.321

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Glenwright, A.J. et al., Structural basis for nutrient acquisition by dominant members of the human gut microbiota. Nature (2017)

Release Date

2016-12-14

Peptides

SusD homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SusD homolog

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