SMTL ID : 5lxa.1

CRYSTAL STRUCTURE OF HUMAN ADIPONECTIN RECEPTOR 2 IN COMPLEX WITH A C18 FREE FATTY ACID AT 3.0 ANGSTROM RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.123, H.269, H.273 Ligands: OLA.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.123, A:H.269, A:H.273, H2O.1

1 x OLA: OLEIC ACID(Non-covalent)

OLA.2: 17 residues within 4Å: Chain A: D.140, Y.141, I.144, R.199, A.200, F.203, L.204, L.241, Y.242, A.246, Y.249, H.269, F.272, F.275, G.279, A.280 Ligands: ZN.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.141, A:I.144, A:R.199, A:F.203, A:F.203, A:Y.242, A:Y.242, A:A.246, A:Y.249, A:Y.249, A:F.272 Water bridges: A:Y.249 Salt bridges: A:H.269

1 x OLB: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLB.3: 11 residues within 4Å: Chain A: P.51, S.52, F.53, R.54, F.57, C.77, S.117, H.128 Chain B: N.169, H.171, N.172 12 PLIP interactions: 4 interactions with chain B, 8 interactions with chain A Hydrogen bonds: B:N.169, B:H.171, B:N.172, A:F.53 Salt bridges: B:H.171, A:R.54 Hydrophobic interactions: A:F.53, A:R.54, A:F.57, A:F.57, A:F.57, A:F.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vasiliauskaite-Brooks, I. et al., Structural insights into adiponectin receptors suggest ceramidase activity. Nature (2017)

Release Date

2017-03-22

Peptides

Adiponectin receptor protein 2: A
Anti-CD30 moab Ki-4 scFv: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

Membrane

We predict this structure to be a membrane protein.
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Adiponectin receptor protein 2

Anti-CD30 moab Ki-4 scFv

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