SMTL ID : 5lxb.2 (1 other biounit)

Crystal structure of a mutant binding protein (5HTBP-AChBP) in complex with palonosetron

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

homo-pentamer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 2 residues within 4Å: Chain A: G.90, N.91 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.91 NAG.2: 3 residues within 4Å: Chain B: N.87, G.90, N.91 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.91 NAG.5: 1 residues within 4Å: Chain D: N.91 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.91 NAG.6: 3 residues within 4Å: Chain E: N.87, G.90, N.91 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.91

3 x 7A9: palonosetron(Non-covalent)

7A9.3: 9 residues within 4Å: Chain B: Y.110, W.164, Y.205, C.207, C.208, Y.212 Chain C: W.72, R.74, M.133 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:Y.205, C:W.72 Hydrogen bonds: B:Y.110 7A9.4: 11 residues within 4Å: Chain C: Y.110, W.164, Y.205, C.207, C.208, Y.212 Chain D: W.72, R.74, V.125, M.133, I.135 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain D Hydrophobic interactions: C:Y.205, C:Y.212, D:W.72, D:V.125 Hydrogen bonds: C:Y.110 7A9.7: 9 residues within 4Å: Chain A: W.72, R.74, M.133 Chain E: Y.110, W.164, Y.205, C.207, C.208, Y.212 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain A Hydrophobic interactions: E:Y.205, E:Y.212, A:W.72 pi-Cation interactions: E:W.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Price, K.L. et al., Palonosetron-5-HT3 Receptor Interactions As Shown by a Binding Protein Cocrystal Structure. ACS Chem Neurosci (2016)

Release Date

2016-10-12

Peptides

Soluble acetylcholine receptor: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
G

C
H

D
I

E
J

Soluble acetylcholine receptor

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