SMTL ID : 5ly7.2 (1 other biounit)

Crystal structure of NagZ H174A mutant from Pseudomonas aeruginosa in complex with the inhibitor 2-acetamido-1,2-dideoxynojirimycin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 4 residues within 4Å: Chain A: R.97, L.350, I.351, D.352 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.97, A:D.352, A:D.352

1 x NOK: 2-ACETAMIDO-1,2-DIDEOXYNOJIRMYCIN(Non-covalent)

NOK.2: 10 residues within 4Å: Chain A: F.53, D.82, R.90, F.134, R.151, K.181, H.182, H.186, D.264, M.268 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.82, A:R.90, A:R.151, A:R.151, A:H.182, A:D.264

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Acebron, I. et al., Catalytic Cycle of the N-Acetylglucosaminidase NagZ from Pseudomonas aeruginosa. J. Am. Chem. Soc. (2017)

Release Date

2017-05-17

Peptides

Beta-hexosaminidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-hexosaminidase

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