SMTL ID : 5lzl.2 (1 other biounit)

Pyrobaculum calidifontis 5-aminolaevulinic acid dehydratase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.47 Å

Oligo State

homo-octamer

Ligands

16 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.125, C.127, C.135, S.174 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.125, A:C.127, A:C.135 ZN.2: 4 residues within 4Å: Chain A: M.176, M.177, E.242, D.246 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.242 ZN.3: 4 residues within 4Å: Chain B: C.125, C.127, C.135, S.174 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.125, B:C.127, B:C.135 ZN.4: 3 residues within 4Å: Chain B: D.178, E.242, D.246 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.242, B:E.242 ZN.5: 5 residues within 4Å: Chain C: C.125, C.127, C.135, S.174, R.226 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.125, C:C.127, C:C.135 ZN.6: 3 residues within 4Å: Chain C: M.177, E.242, D.246 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.242 ZN.7: 4 residues within 4Å: Chain D: C.125, C.127, C.135, S.174 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.125, D:C.127, D:C.135 ZN.8: 4 residues within 4Å: Chain D: M.176, D.178, E.242, D.246 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:E.242 ZN.9: 4 residues within 4Å: Chain E: C.125, C.127, C.135, S.174 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:C.125, E:C.127, E:C.135 ZN.10: 4 residues within 4Å: Chain E: M.176, M.177, E.242, D.246 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:E.242 ZN.11: 4 residues within 4Å: Chain F: C.125, C.127, C.135, S.174 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:C.125, F:C.127, F:C.135 ZN.12: 3 residues within 4Å: Chain F: D.178, E.242, D.246 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:E.242, F:E.242 ZN.13: 5 residues within 4Å: Chain G: C.125, C.127, C.135, S.174, R.226 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:C.125, G:C.127, G:C.135 ZN.14: 3 residues within 4Å: Chain G: M.177, E.242, D.246 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:E.242 ZN.15: 4 residues within 4Å: Chain H: C.125, C.127, C.135, S.174 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:C.125, H:C.127, H:C.135 ZN.16: 4 residues within 4Å: Chain H: M.176, D.178, E.242, D.246 1 PLIP interactions: 1 interactions with chain H Metal complexes: H:E.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mills-Davies, N. et al., Structural studies of substrate and product complexes of 5-aminolaevulinic acid dehydratase from humans, Escherichia coli and the hyperthermophile Pyrobaculum calidifontis. Acta Crystallogr D Struct Biol (2017)

Release Date

2016-10-12

Peptides

Delta-aminolevulinic acid dehydratase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
J

C
K

D
L

E
I

F
J

G
K

H
L

Delta-aminolevulinic acid dehydratase

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