SMTL ID : 5m0w.1

N-terminal domain of mouse Shisa 3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: Y.6, H.8, G.9, R.61 Ligands: MES.9 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.9 Water bridges: A:G.20 Salt bridges: A:H.8, A:R.61 SO4.2: 4 residues within 4Å: Chain A: R.51, E.53, Q.54, G.55 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.55 Water bridges: A:R.51, A:Q.54, A:G.56 Salt bridges: A:R.51

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: P.3, G.4, Y.6, Q.22 Ligands: GOL.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.22, A:Q.22 Water bridges: A:P.3 GOL.4: 5 residues within 4Å: Chain A: G.9, V.11, Y.17, D.60, R.61 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.9, A:R.61 GOL.5: 6 residues within 4Å: Chain A: E.5, Y.6, H.8, R.51, Q.54 Ligands: GOL.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.5, A:Y.6, A:H.8, A:R.51 Water bridges: A:Q.54, A:Q.54

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 4 residues within 4Å: Chain A: E.25, D.26, F.27, D.28 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.25, A:F.27 Water bridges: A:E.25, A:D.26 EDO.7: 2 residues within 4Å: Chain A: A.13, A.40 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.14 EDO.8: 5 residues within 4Å: Chain A: P.3, G.4, Q.22, C.23, P.24 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.4, A:Q.22 Water bridges: A:Q.22

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.9: 8 residues within 4Å: Chain A: Y.6, H.8, G.9, Y.17, E.19, G.20, R.61 Ligands: SO4.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.9, A:Y.17, A:G.20 Water bridges: A:Y.6, A:Y.6, A:Y.6, A:R.61 Salt bridges: A:H.8, A:R.61

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.10: 3 residues within 4Å: Chain A: G.37, D.49, A.50 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.37, A:G.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCoy, A.J. et al., Ab initio solution of macromolecular crystal structures without direct methods. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-04-05

Peptides

Protein shisa-3 homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein shisa-3 homolog