SMTL ID : 5m0x.1

Structure of apo structure of GH36 alpha-galactosidase from Thermotoga maritima

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: H.441, D.442, D.477 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.442, A:D.477, H2O.2, H2O.7, H2O.7, H2O.7

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: F.414, W.415, G.416, E.417, H.418 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:W.415, A:G.416, A:E.417, A:H.418 Water bridges: A:E.417, A:H.418, A:H.418 SO4.3: 3 residues within 4Å: Chain A: E.457, K.458, T.459 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.458, A:T.459 SO4.4: 4 residues within 4Å: Chain A: K.325, D.326, E.327, K.362 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.326, A:D.326, A:E.327 Salt bridges: A:K.325, A:K.362

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adamson, C. et al., Structural Snapshots for Mechanism-Based Inactivation of a Glycoside Hydrolase by Cyclopropyl Carbasugars. Angew.Chem.Int.Ed.Engl. (2016)

Release Date

2016-11-09

Peptides

Alpha-galactosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-galactosidase

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