SMTL ID : 5m1q.1

Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Zinc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: D.44, H.171, D.173 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.44, A:H.171, A:D.173, A:D.173, H2O.4 ZN.2: 2 residues within 4Å: Chain A: E.81, H.85 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.81, A:H.85, H2O.1 ZN.3: 2 residues within 4Å: Chain A: D.38, D.173 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.38, A:D.173, H2O.1, H2O.1, H2O.2, H2O.2 ZN.4: 1 residues within 4Å: Chain A: D.8 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.8, A:D.8, H2O.4, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, R.G. et al., Viral genome packaging terminase cleaves DNA using the canonical RuvC-like two-metal catalysis mechanism. Nucleic Acids Res. (2017)

Release Date

2016-10-26

Peptides

Phage terminase large subunit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phage terminase large subunit