SMTL ID : 5m1r.1

X-ray structure of human G166D PGK-1 mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain A: G.213, A.214, K.219, G.237, G.238, F.241, L.256, G.312, L.313, N.336, G.337, P.338, G.340, V.341, E.343, G.373, D.374, T.375 Ligands: MG.2 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:A.214, A:G.238, A:G.312, A:E.343, A:D.374, A:D.374, A:D.374, A:T.375 Water bridges: A:T.375 Salt bridges: A:K.219, A:K.219

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 7 residues within 4Å: Chain A: N.336, G.337, G.371, G.372, D.374, T.375 Ligands: ADP.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.372, A:T.375, H2O.1 MG.3: 6 residues within 4Å: Chain A: E.147, R.150, A.151, S.154, G.177, N.179 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fiorillo, A. et al., The phosphoglycerate kinase 1 variants found in carcinoma cells display different catalytic activity and conformational stability compared to the native enzyme. PLoS ONE (2018)

Release Date

2017-12-20

Peptides

Phosphoglycerate kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphoglycerate kinase 1