SMTL ID : 5m36.1

The molecular tweezer CLR01 stabilizes a disordered protein-protein interface

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

hetero-2-2-mer

Ligands

4 x 9SZ: (1R,5S,9S,16R,20R,24S,28S,35R)-3,22-Bis(dihydroxyphosphoryloxy)tridecacyclo[22.14.1.15,20.19,16.128,35.02,23.04,21.06,19.08,17.010,15.025,38.027,36.029,34]dotetraconta-2(23),3,6,8(17),10,12,14,18,21,25,27(36),29,31,33,37-pentadecaene(Non-covalent)

9SZ.1: 6 residues within 4Å: Chain A: R.59, S.63, Q.66, Y.178, E.179 Ligands: 9SZ.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.178, A:E.179, A:E.179 9SZ.2: 3 residues within 4Å: Chain A: N.182, P.184 Ligands: 9SZ.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.182 9SZ.6: 3 residues within 4Å: Chain B: N.182, P.184 Ligands: 9SZ.9 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:P.184 9SZ.9: 10 residues within 4Å: Chain B: R.59, S.63, Q.66, Y.178, E.179, N.182 Chain C: R.2, S.3, Y.6 Ligands: 9SZ.6 10 PLIP interactions: 2 interactions with chain B, 8 interactions with chain C Hydrophobic interactions: B:Y.178, B:E.179, C:Y.6, C:Y.6 Salt bridges: C:R.2 pi-Cation interactions: C:R.2, C:R.2, C:R.2, C:R.2, C:R.2

2 x BEZ: BENZOIC ACID(Non-covalent)

BEZ.3: 4 residues within 4Å: Chain A: F.195, M.217, Q.218, R.221 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.195, A:M.217, A:Q.218 Salt bridges: A:R.221 BEZ.7: 4 residues within 4Å: Chain B: F.195, M.217, Q.218, R.221 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.195 Salt bridges: B:R.221

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) GOL.5: 3 residues within 4Å: Chain A: K.192, D.196, R.221 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.192, A:D.196, A:R.221 GOL.8: 3 residues within 4Å: Chain A: K.8 Chain B: Y.81, K.84 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bier, D. et al., The Molecular Tweezer CLR01 Stabilizes a Disordered Protein-Protein Interface. J. Am. Chem. Soc. (2017)

Release Date

2017-11-15

Peptides

14-3-3 protein zeta/delta: AB
M-phase inducer phosphatase 3: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

14-3-3 protein zeta/delta

M-phase inducer phosphatase 3

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