SMTL ID : 5m3t.1

Structural tuning of CD81LEL (space group P64)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-dimer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: L.61, N.64, L.65, C.66, P.67 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: V.5, N.6, K.7 Chain B: F.17 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: T.52, L.53, T.54, A.55 Ligand excluded by PLIP

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 9 residues within 4Å: Chain A: F.17, Q.20, A.21, Q.24, N.33, A.34, V.37 Chain B: F.4, K.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.20, A:Q.24 EDO.5: 9 residues within 4Å: Chain A: T.44, L.45, K.84, D.87, L.88, G.93 Chain B: T.40, T.44 Ligands: EDO.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.84 EDO.6: 4 residues within 4Å: Chain A: L.45, K.84, G.93 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.84 EDO.7: 8 residues within 4Å: Chain B: K.39, N.63, N.64, C.66, P.67, S.68, G.69, S.70 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.39, B:N.64, B:G.69, B:S.70 EDO.8: 7 residues within 4Å: Chain B: F.17, Q.20, A.21, Q.24, N.33, A.34, V.37 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.17, B:N.33 EDO.9: 5 residues within 4Å: Chain B: S.50, S.51, D.80, H.82, Q.83 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cunha, E.S. et al., Mechanism of Structural Tuning of the Hepatitis C Virus Human Cellular Receptor CD81 Large Extracellular Loop. Structure (2017)

Release Date

2016-12-14

Peptides

CD81 antigen: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CD81 antigen

Related Entries With Identical Sequence