SMTL ID : 5m43.1

Crystal structure of Yvh1 phosphatase domain from Chaetomium thermophilum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 8 residues within 4Å: Chain A: D.61, C.103, A.104, M.105, G.106, K.107, S.108, R.109 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.61, A:A.104, A:M.105, A:K.107, A:S.108, A:R.109, A:R.109 NO3.2: 5 residues within 4Å: Chain A: K.121, Y.122, P.123, Y.124, R.125 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.122, A:Y.124, A:R.125 Water bridges: A:K.121

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: D.58, I.59, D.64, Q.65, D.66, H.70 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.58, A:D.66, A:D.66 Water bridges: A:D.64 GOL.4: 4 residues within 4Å: Chain A: P.123, K.128, W.167, G.170 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baler, J. et al., Interaction network of the ribosome assembly machinery from a eukaryotic thermophile. Protein Sci. (2017)

Release Date

2016-11-30

Peptides

Putative uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative uncharacterized protein