SMTL ID : 5m4n.1

Application of Off-Rate Screening in the Identification of Novel Pan-Isoform Inhibitors of Pyruvate Dehydrogenase Kinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x 7FV: [2,4-bis(oxidanyl)phenyl]-[(2~{S})-2-methyl-6-(3-methylquinolin-2-yl)-3,4-dihydro-2~{H}-quinolin-1-yl]methanone(Non-covalent)

7FV.1: 11 residues within 4Å: Chain A: L.253, N.256, A.257, R.259, A.260, D.291, G.295, V.296, L.331, L.347, T.355 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.260, A:V.296, A:L.331, A:L.347 Hydrogen bonds: A:N.256, A:D.291, A:G.295, A:T.355 Water bridges: A:G.293 pi-Cation interactions: A:R.259

1 x TF3: N-(2-AMINOETHYL)-2-{3-CHLORO-4-[(4-ISOPROPYLBENZYL)OXY]PHENYL} ACETAMIDE(Non-covalent)

TF3.2: 14 residues within 4Å: Chain A: L.72, P.73, R.75, V.76, M.131, G.134, V.135, Y.138, V.147, S.148, N.151, I.152, F.155, L.156 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.72, A:V.76, A:V.76, A:Y.138, A:Y.138, A:V.147, A:I.152, A:F.155, A:L.156 Hydrogen bonds: A:R.75, A:R.75 pi-Cation interactions: A:R.75

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: R.163, I.164 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: R.259 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain A: L.347 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brough, P.A. et al., Application of Off-Rate Screening in the Identification of Novel Pan-Isoform Inhibitors of Pyruvate Dehydrogenase Kinase. J. Med. Chem. (2017)

Release Date

2017-02-22

Peptides

[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial

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