SMTL ID : 5m55.1

Nek2 bound to arylaminopurine 71

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x 7GG: 6-[(~{Z})-2-(diethylamino)ethenyl]-~{N}-phenyl-7~{H}-purin-2-amine(Non-covalent)

7GG.1: 13 residues within 4Å: Chain A: I.14, C.22, V.35, K.37, V.68, M.86, E.87, Y.88, C.89, E.90, G.92, D.93, F.148 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.88 Hydrogen bonds: A:C.89, A:C.89

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.105, Q.106, Y.107 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.105, A:Y.107 Water bridges: A:Y.107 SO4.3: 7 residues within 4Å: Chain A: H.128, E.195, K.196, I.199, S.261, V.262, E.263 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.262 Salt bridges: A:H.128 SO4.4: 5 residues within 4Å: Chain A: R.234, R.235, I.236, P.237, Y.238 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.236 Water bridges: A:Y.238, A:Y.238, A:Y.238 Salt bridges: A:R.234

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: P.65, N.154, H.277, H.279 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coxon, C.R. et al., Structure-guided design of purine-based probes for selective Nek2 inhibition. Oncotarget (2017)

Release Date

2016-11-02

Peptides

Serine/threonine-protein kinase Nek2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase Nek2

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